RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 GLB1LQ6UWU2 654 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 FBXO32Q969P5 355 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 OSBPL2Q9H1P3 480 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 PIF1Q9H611 641 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 CCSER2Q9H7U1 834 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 ADAM28Q9UKQ2 775 aa16.76■□□□□ 0.27
VPS54-201ENST00000272322 PRKAR2AP13861 404 aaKnown RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 CASP2P42575 452 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 GEMP55040 296 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 PRKAA1Q13131 559 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 CEACAM7Q14002 265 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 IRGCQ6NXR0 463 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 CNBD2Q96M20 576 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 HBEGFQ99075 208 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 MRPL46Q9H2W6 279 aaKnown RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 FAM96AQ9H5X1 160 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 CSNK1G1Q9HCP0 422 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 RGSL1A5PLK6 1076 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 CABYRO75952 493 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 CES1P23141 567 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 RPL9P32969 192 aaKnown RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 HCAR3P49019 387 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 CTXN3Q4LDR2 81 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 FBXL22Q6P050 247 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 IFNL1Q8IU54 200 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 ACTRT2Q8TDY3 377 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 STYXQ8WUJ0 223 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 DNAJC1Q96KC8 554 aaKnown RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 FCRL5Q96RD9 977 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 KCNA7Q96RP8 456 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 RPL26L1Q9UNX3 145 aaKnown RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 IRF1P10914 325 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 SERPINH1P50454 418 aaKnown RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 MLLT6P55198 1093 aaPredicted RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 CDKN2DP55273 166 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 BTKQ06187 659 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 DUSP4Q13115 394 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 NAB1Q13506 487 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 TBCCQ15814 346 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 FOXB2Q5VYV0 432 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 RTN4RL1Q86UN2 441 aaPredicted RBP16.75■□□□□ 0.27
VPS54-201ENST00000272322 IFNEQ86WN2 208 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 BPIFA1Q9NP55 256 aa16.75■□□□□ 0.27
VPS54-201ENST00000272322 SF3B1O75533 1304 aaKnown RBP eCLIP16.74■□□□□ 0.272e-21■■■■■ 124.1
VPS54-201ENST00000272322 THRAP10827 490 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 GLDCP23378 1020 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 BNC2Q6ZN30 1099 aaPredicted RBP16.74■□□□□ 0.27
VPS54-201ENST00000272322 OR7D4Q8NG98 312 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 RMDN1Q96DB5 314 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 NEU3Q9UQ49 428 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 BTRCQ9Y297 605 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 RANBP2P49792 3224 aaKnown RBP16.74■□□□□ 0.27
VPS54-201ENST00000272322 PMLP29590 882 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 SCNN1BP51168 640 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 NSUN2Q08J23 767 aaKnown RBP eCLIP16.74■□□□□ 0.27
VPS54-201ENST00000272322 PDAP1Q13442 181 aaKnown RBP16.74■□□□□ 0.27
VPS54-201ENST00000272322 MED21Q13503 144 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 STXBP5Q5T5C0 1151 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 MFSD14CQ5VZR4 134 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 RASAL3Q86YV0 1011 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 DDIASQ8IXT1 998 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 EFHBQ8N7U6 833 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 RTL3Q8N8U3 475 aaKnown RBP16.74■□□□□ 0.27
VPS54-201ENST00000272322 PGAP3Q96FM1 320 aaPredicted RBP16.74■□□□□ 0.27
VPS54-201ENST00000272322 NSUN5Q96P11 429 aaKnown RBP16.74■□□□□ 0.27
VPS54-201ENST00000272322 CRISPLD1Q9H336 500 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 V9GYQ6 96 aa16.74■□□□□ 0.27
VPS54-201ENST00000272322 MUSKO15146 869 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 PAMP19021 973 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 PFKFB4Q16877 469 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 MS4A13Q5J8X5 152 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 RANBP10Q6VN20 620 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 KDM1BQ8NB78 822 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 KLHL4Q9C0H6 718 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 ZFYVE28Q9HCC9 887 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 PPARGP37231 505 aaPredicted RBP16.73■□□□□ 0.27
VPS54-201ENST00000272322 POLD3Q15054 466 aaPredicted RBP16.73■□□□□ 0.27
VPS54-201ENST00000272322 UGP2Q16851 508 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 KIF19Q2TAC6 998 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 HECTD2Q5U5R9 776 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 TMEM207Q6UWW9 146 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 IFT43Q96FT9 208 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 LRGUKQ96M69 825 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 GPR78Q96P69 363 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 GPR62Q9BZJ7 368 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 ENTPD7Q9NQZ7 604 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 MARCH2Q9P0N8 246 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 A8MT66 165 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 OR6B1O95007 311 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 MAGEA12P43365 314 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 MSLNQ13421 630 aaPredicted RBP16.73■□□□□ 0.27
VPS54-201ENST00000272322 FAM91A1Q658Y4 838 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 AMIGO2Q86SJ2 522 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 DIS3LQ8TF46 1054 aaKnown RBP16.73■□□□□ 0.27
VPS54-201ENST00000272322 ATP6V1E2Q96A05 226 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 PPWD1Q96BP3 646 aaKnown RBP16.73■□□□□ 0.27
VPS54-201ENST00000272322 IL12RB2Q99665 862 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 C1orf21Q9H246 121 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 SMPD4Q9NXE4 827 aa16.73■□□□□ 0.27
VPS54-201ENST00000272322 MAGEA13PA6NCF6 341 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms