RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 LINC00032P0C843 101 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 FCGR1AP12314 374 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 CES1P23141 567 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 TAS2R39P59534 338 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 RHDQ02161 417 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 MERTKQ12866 999 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 HSDL1Q3SXM5 330 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 ZYG11AQ6WRX3 759 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 RNF111Q6ZNA4 994 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 ZDHHC13Q8IUH4 622 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 DCBLD1Q8N8Z6 715 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 OR7A2PQ8NGA2 310 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 MRIQ9BWK5 157 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 C6orf62Q9GZU0 229 aaPredicted RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 GIMAP2Q9UG22 337 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 LIMD1Q9UGP4 676 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 NUDT5Q9UKK9 219 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 ANKRD6Q9Y2G4 727 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 BCORQ6W2J9 1755 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 FBP2O00757 339 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 TPD52L2O43399 206 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 SH3BP5O60239 455 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 DLX3O60479 287 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 B4GALT4O60513 344 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 CNOT3O75175 753 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 ANXA9O76027 345 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 NADKO95544 446 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 SLC7A1P30825 629 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 SEPHS1P49903 392 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ZNF132P52740 706 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 SP2Q02086 613 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 PRKCQQ04759 706 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 TMEM132BQ14DG7 1078 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ZNF423Q2M1K9 1284 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ATP6AP1LQ52LC2 224 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 FGD3Q5JSP0 725 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 GJC2Q5T442 439 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 ZNF280DQ6N043 979 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 CRTC3Q6UUV7 619 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 SPESP1Q6UW49 350 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 METTL7BQ6UX53 244 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 FRA10AC1Q70Z53 315 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 RALGPS2Q86X27 583 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 FLAD1Q8NFF5 587 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ASB7Q9H672 318 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 SP110Q9HB58 689 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ZBTB26Q9HCK0 441 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 IGSF9Q9P2J2 1179 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ST14Q9Y5Y6 855 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 U3KQV3 271 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 MYH9P35579 1960 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 GOLGA8CPA6NN73 597 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 MSCO60682 206 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 SMIM18P0DKX4 95 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 CPB1P15086 417 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 PRKAA2P54646 552 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 TTLL4Q14679 1199 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 PPP1R3AQ16821 1122 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 HSF5Q4G112 596 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 TIGD2Q4W5G0 525 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 AARS2Q5JTZ9 985 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 TMTC4Q5T4D3 741 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 TIFABQ6ZNK6 161 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ANKRD52Q8NB46 1076 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 OSCP1Q8WVF1 389 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 DCPSQ96C86 337 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 ZFYVE19Q96K21 471 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 GJD4Q96KN9 370 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 FTHL17Q9BXU8 183 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 MOCS1Q9NZB8 636 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 PNMA8BQ9ULN7 279 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 SYNPO2Q9UMS6 1093 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 AAR2Q9Y312 384 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 HCRTO43612 131 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 MT-CYBP00156 380 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 IL1BP01584 269 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 GJA8P48165 433 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 CDK18Q07002 472 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 RSBN1Q5VWQ0 802 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 CES4AQ5XG92 561 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 ZNF772Q68DY9 489 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 ESRP1Q6NXG1 681 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 ANGPTL8Q6UXH0 198 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 MAVSQ7Z434 540 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 PTGR2Q8N8N7 351 aaPredicted RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 CALML6Q8TD86 181 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 RORBQ92753 470 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 RMDN1Q96DB5 314 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 RPL10LQ96L21 214 aaKnown RBP11.12□□□□□ -0.63
CLN3-244ENST00000636147 SNX10Q9Y5X0 201 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 CEPT1Q9Y6K0 416 aa11.12□□□□□ -0.63
CLN3-244ENST00000636147 H3BNH8 94 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 MDM4O15151 490 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 SPTLC1O15269 473 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 SNAP91O60641 907 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 HALP42357 657 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 RPS9P46781 194 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 TPTEP56180 551 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 PAN2Q504Q3 1202 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 PDCD4Q53EL6 469 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms