RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 FAM102AQ5T9C2 384 aaPredicted RBP14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 ZCCHC8Q6NZY4 707 aaKnown RBP14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 CCAR2Q8N163 923 aaKnown RBP14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 SLC35G2Q8TBE7 412 aa14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 MRPL47Q9HD33 250 aaKnown RBP14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 MYO1AQ9UBC5 1043 aa14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 SFMBT1Q9UHJ3 866 aa14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 INTS6Q9UL03 887 aaKnown RBP14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 ERVW-1Q9UQF0 538 aa14.18□□□□□ -0.14
SHKBP1-218ENST00000598907 GOLGA6L7A0A1B0GV03 622 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 USP27XA6NNY8 438 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 GOLGA8SH3BPF8 625 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 PLD2O14939 933 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 PLRG1O43660 514 aaKnown RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 HSF2BPO75031 334 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 KRT3P12035 628 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 VAV1P15498 845 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 RFC1P35251 1148 aaPredicted RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 NUDT1P36639 197 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 CASRP41180 1078 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 CLDN2P57739 230 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 RPL7AP62424 266 aaKnown RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 YWHAZP63104 245 aaKnown RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 DEFB133Q30KQ1 61 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 ADGRF1Q5T601 910 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 RNF219Q5W0B1 726 aaPredicted RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 TRNP1Q6NT89 227 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 DNAJC24Q6P3W2 148 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 TRIM69Q86WT6 500 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 ZNF548Q8NEK5 533 aaPredicted RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 JOSD2Q8TAC2 188 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 TTC17Q96AE7 1141 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 CALR3Q96L12 384 aaKnown RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 RPL10LQ96L21 214 aaKnown RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 SLC2A13Q96QE2 648 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 DUSP23Q9BVJ7 150 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 SELENOOQ9BVL4 669 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 NUP85Q9BW27 656 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 TSGA10Q9BZW7 698 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 METTL5Q9NRN9 209 aaKnown RBP14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 TRIM10Q9UDY6 481 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 SLCO3A1Q9UIG8 710 aa14.17□□□□□ -0.14
SHKBP1-218ENST00000598907 TARSL2A2RTX5 802 aaKnown RBP14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 C2CD4BA6NLJ0 364 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 KRT86O43790 486 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 TCEA3O75764 348 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 LTFP02788 710 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 UGT1A5P35504 534 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 FLT3P36888 993 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 STK19P49842 368 aaPredicted RBP14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 RIPPLY3P57055 190 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 KCNAB2Q13303 367 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 SPIDRQ14159 915 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 BSPRYQ5W0U4 402 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 PTAR1Q7Z6K3 402 aaPredicted RBP14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 B3GNT8Q7Z7M8 397 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 DSG4Q86SJ6 1040 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 SLC22A18ASQ8N1D0 253 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 ARHGAP18Q8N392 663 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 FBXO39Q8N4B4 442 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 CARNMT1Q8N4J0 409 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 RNF10Q8N5U6 811 aaKnown RBP14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 TMEM145Q8NBT3 493 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 FNIP1Q8TF40 1166 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 NT5C3BQ969T7 300 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 POPDC2Q9HBU9 364 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 SEPT10Q9P0V9 454 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 CTTNBP2NLQ9P2B4 639 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 PISDQ9UG56 409 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 PCDHGA7Q9Y5G6 932 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 ITPR2Q14571 2701 aa14.16□□□□□ -0.14
SHKBP1-218ENST00000598907 C2CD3Q4AC94 2353 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 GOLGA6L9A6NEM1 432 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 CCP110O43303 1012 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 RNGTTO60942 597 aaKnown RBP14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 DAB1O75553 588 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 SLC6A4P31645 630 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 POLE2P56282 527 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 OGDHQ02218 1023 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 CNTN1Q12860 1018 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 CDH18Q13634 790 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 ELAVL3Q14576 367 aaKnown RBP14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 NR0B2Q15466 257 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 PITRM1Q5JRX3 1037 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 AGBL4Q5VU57 503 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 RAB11FIP2Q7L804 512 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 BNIPLQ7Z465 357 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 ZFAND4Q86XD8 727 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 DEFB106AQ8N104 65 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 TPCN2Q8NHX9 752 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 RNF139Q8WU17 664 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 RXFP2Q8WXD0 754 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 EDEM1Q92611 657 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 PTPRN2Q92932 1015 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 LMLNQ96KR4 655 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 PRICKLE1Q96MT3 831 aaPredicted RBP14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 MCEEQ96PE7 176 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 TRIM62Q9BVG3 475 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 FOXP3Q9BZS1 431 aa14.15□□□□□ -0.14
SHKBP1-218ENST00000598907 TRIM7Q9C029 511 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms