RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ZBBXA8MT70 800 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 PMM2O15305 246 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 SNAP29O95721 258 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 C8BP07358 591 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 DNAJB2P25686 324 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 NPY2RP49146 381 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 BPIFB6Q8NFQ5 453 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 TRIB2Q92519 343 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 PHF21AQ96BD5 680 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 ATG4CQ96DT6 458 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 WDR12Q9GZL7 423 aaKnown RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 INTS7Q9NVH2 962 aaKnown RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 SLC17A7Q9P2U7 560 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 IPPQ9Y573 584 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 SF3B1O75533 1304 aaKnown RBP eCLIP10.95□□□□□ -0.66
CLK3-226ENST00000569406 TOMM70O94826 608 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 IFNA16P05015 189 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 EPHA3P29320 983 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 C1QBPQ07021 282 aaKnown RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 Q3ZCU0 254 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 BEND5Q7L4P6 421 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 CYFIP1Q7L576 1253 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 VSIG10LQ86VR7 867 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 EPS8L1Q8TE68 723 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 KLHL32Q96NJ5 620 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 PPP1R2P1Q96PQ5 205 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 SPATA6Q9NWH7 488 aaPredicted RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 ACAD8Q9UKU7 415 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 EIF3LQ9Y262 564 aaKnown RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 SNX13Q9Y5W8 968 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 MYH9P35579 1960 aaKnown RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 PRSS44E7EML9 344 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 K7ENM7 598 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 APOL1O14791 398 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 CPNE3O75131 537 aaKnown RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 ZMPSTE24O75844 475 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 PIAS1O75925 651 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 DDCP20711 480 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 RPL35P42766 123 aaKnown RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 SNX16P57768 344 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 SP2Q02086 613 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 SP4Q02446 784 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 KRT17Q04695 432 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 TCEAL1Q15170 157 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 PAGE2BQ5JRK9 111 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 ATAD3CQ5T2N8 411 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 PRAMEF18Q5VWM3 479 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 CIAPIN1Q6FI81 312 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 CENPUQ71F23 418 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 HM13Q8TCT9 377 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 DDX1Q92499 740 aaKnown RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 MSANTD3Q96H12 275 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 PKP2Q99959 881 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 NTPCRQ9BSD7 190 aaKnown RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 SAV1Q9H4B6 383 aaPredicted RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 SP110Q9HB58 689 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 HSPBP1Q9NZL4 362 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 HACL1Q9UJ83 578 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 PCDHGA7Q9Y5G6 932 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 NDUFA2O43678 99 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 GREM1O60565 184 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 PTPN1P18031 435 aaKnown RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 DCKP27707 260 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 COILP38432 576 aaPredicted RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 CAPZA2P47755 286 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 COPAP53621 1224 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 ATN1P54259 1190 aaPredicted RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 GRM7Q14831 915 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 ESCO2Q56NI9 601 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 GARNL3Q5VVW2 1013 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 CHST15Q7LFX5 561 aaPredicted RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 CBWD2Q8IUF1 395 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 PPP1R36Q96LQ0 422 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 NPLQ9BXD5 320 aaPredicted RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 HAPLN2Q9GZV7 340 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 UBE2TQ9NPD8 197 aaPredicted RBP10.94□□□□□ -0.66
CLK3-226ENST00000569406 EDARQ9UNE0 448 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 ZNF175Q9Y473 711 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 RAD54BQ9Y620 910 aa10.94□□□□□ -0.66
CLK3-226ENST00000569406 C7orf72A4D263 438 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 H0YJX3 145 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 I3L521 148 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 FZD9O00144 591 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 PLOD2O00469 737 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 SLC16A4O15374 487 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 ATG13O75143 517 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 IFNB1P01574 187 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 GSNP06396 782 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 TMEM253P0C7T8 217 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 CPOXP36551 454 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 GRIA1P42261 906 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 AQP5P55064 265 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 MYL7Q01449 175 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 AMIGO1Q86WK6 493 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 ZFP90Q8TF47 636 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 C1orf54Q8WWF1 131 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 TTC9Q92623 222 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 SGIP1Q9BQI5 828 aa10.93□□□□□ -0.66
CLK3-226ENST00000569406 WARS2Q9UGM6 360 aaKnown RBP10.93□□□□□ -0.66
CLK3-226ENST00000569406 PCDHA3Q9Y5H8 950 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 226.9 ms