RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TTC7BQ86TV6 843 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 SPATS2Q86XZ4 545 aaKnown RBP15.22■□□□□ 0.03
VPS39-210ENST00000568357 MFSD2AQ8NA29 543 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 TMEM145Q8NBT3 493 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 KCTD6Q8NC69 237 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 FEM1CQ96JP0 617 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 MYOCQ99972 504 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 SLC32A1Q9H598 525 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 SP110Q9HB58 689 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 FZD3Q9NPG1 666 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 ITM2BQ9Y287 266 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 DSPP15924 2871 aaKnown RBP15.22■□□□□ 0.03
VPS39-210ENST00000568357 ITPR1Q14643 2758 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 SPAARA0A1B0GVQ0 90 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 AREL1O15033 823 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 MAFKO60675 156 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 MTA2O94776 668 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 PIGNO95427 931 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 PAK4O96013 591 aaPredicted RBP15.21■□□□□ 0.03
VPS39-210ENST00000568357 MAN1A1P33908 653 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 CSNK1DP48730 415 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 NXPH1P58417 271 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 RPS21P63220 83 aaKnown RBP15.21■□□□□ 0.03
VPS39-210ENST00000568357 SLC10A7Q0GE19 358 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 TCEAL1Q15170 157 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 SHBQ15464 509 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 SOWAHCQ53LP3 525 aaPredicted RBP15.21■□□□□ 0.03
VPS39-210ENST00000568357 ANKRD20A8PQ5CZ79 823 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 LRRC73Q5JTD7 316 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 SRLQ86TD4 932 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 CAMK1DQ8IU85 385 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 PCDH19Q8TAB3 1148 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 RAB7BQ96AH8 199 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 SKA1Q96BD8 255 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 NSMCE3Q96MG7 304 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 CALN1Q9BXU9 219 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 SLC17A9Q9BYT1 436 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 RCOR3Q9P2K3 495 aaPredicted RBP15.21■□□□□ 0.03
VPS39-210ENST00000568357 DKK3Q9UBP4 350 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 LCMT1Q9UIC8 334 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 INTUQ9ULD6 942 aa15.21■□□□□ 0.03
VPS39-210ENST00000568357 CACNA1EQ15878 2313 aa15.21■□□□□ 0.02
VPS39-210ENST00000568357 LAMA5O15230 3695 aa15.21■□□□□ 0.02
VPS39-210ENST00000568357 DMXL2Q8TDJ6 3036 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 ASCC3Q8N3C0 2202 aaKnown RBP15.2■□□□□ 0.02
VPS39-210ENST00000568357 LOC400499M0QZD8 3231 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 TTC24A2A3L6 582 aaPredicted RBP15.2■□□□□ 0.02
VPS39-210ENST00000568357 IGLON5A6NGN9 336 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 RAD51BO15315 384 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 TSPAN6O43657 245 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 CBFA2T3O75081 653 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 LCA5LO95447 670 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 KRT7P08729 469 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 ARHGAP25P42331 645 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 MAGEA1P43355 309 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 CLDN2P57739 230 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 IL9RQ01113 521 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 NSUN2Q08J23 767 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS39-210ENST00000568357 RFTN1Q14699 578 aaPredicted RBP15.2■□□□□ 0.02
VPS39-210ENST00000568357 LBRQ14739 615 aaKnown RBP15.2■□□□□ 0.02
VPS39-210ENST00000568357 PDK2Q15119 407 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 SLC45A4Q5BKX6 768 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 KIAA1161Q6NSJ0 714 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 NAXDQ8IW45 347 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 RHOT2Q8IXI1 618 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 SETD7Q8WTS6 366 aaKnown RBP15.2■□□□□ 0.02
VPS39-210ENST00000568357 RFFLQ8WZ73 363 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 RAPGEF5Q92565 580 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 PSKH2Q96QS6 385 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 ELF4Q99607 663 aaPredicted RBP15.2■□□□□ 0.02
VPS39-210ENST00000568357 CINPQ9BW66 212 aaPredicted RBP15.2■□□□□ 0.02
VPS39-210ENST00000568357 C1QTNF2Q9BXJ5 285 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 SUV39H2Q9H5I1 410 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 GDF3Q9NR23 364 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 TFR2Q9UP52 801 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 PCDHGB2Q9Y5G2 931 aa15.2■□□□□ 0.02
VPS39-210ENST00000568357 A0A1B0GTQ1 180 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 NEMP1O14524 444 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 HYAL3O43820 417 aaPredicted RBP15.19■□□□□ 0.02
VPS39-210ENST00000568357 PCDHGA12O60330 932 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 HNRNPA2B1P22626 353 aaKnown RBP15.19■□□□□ 0.02
VPS39-210ENST00000568357 KDELR1P24390 212 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 AKT2P31751 481 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 SIM1P81133 766 aaPredicted RBP15.19■□□□□ 0.02
VPS39-210ENST00000568357 OVGP1Q12889 678 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 PAFAH1B3Q15102 231 aaKnown RBP15.19■□□□□ 0.02
VPS39-210ENST00000568357 TRIP6Q15654 476 aaKnown RBP15.19■□□□□ 0.02
VPS39-210ENST00000568357 TMCO4Q5TGY1 634 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 NCBP2-AS2Q69YL0 99 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 IQCHQ86VS3 1027 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 ZSWIM9Q86XI8 627 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 PGBD5Q8N414 524 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 PQLC3Q8N755 202 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 HCAR2Q8TDS4 363 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 RHBDD1Q8TEB9 315 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 FAF2Q96CS3 445 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 KLHDC7BQ96G42 594 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 BMFQ96LC9 184 aa15.19■□□□□ 0.02
VPS39-210ENST00000568357 ZNF641Q96N77 438 aaPredicted RBP15.19■□□□□ 0.02
VPS39-210ENST00000568357 ZNF599Q96NL3 588 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms