RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 YBX3P16989 372 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 RPL10P27635 214 aaKnown RBP14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 STT3AP46977 705 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 PSMD8P48556 350 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 TAF6P49848 677 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 PLK1P53350 603 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 PITRM1Q5JRX3 1037 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 SAMD4BQ5PRF9 694 aaKnown RBP14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 ZNF280DQ6N043 979 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 BNIPLQ7Z465 357 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 GPR141Q7Z602 305 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 CLVS1Q8IUQ0 354 aaPredicted RBP14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 HMGCLL1Q8TB92 370 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 SLC2A13Q96QE2 648 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 SLC9A7Q96T83 725 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 HNRNPABQ99729 332 aaKnown RBP14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 ULBP1Q9BZM6 244 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 SLC8A2Q9UPR5 921 aa14.1□□□□□ -0.15
VPS9D1-202ENST00000561976 TCRBV3S1A0A5B6 114 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SAC3D1A6NKF1 404 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 H3BRB1 525 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 PIRO00625 290 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 MT-CYBP00156 380 aaPredicted RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 LRPAP1P30533 357 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 GRIA3P42263 894 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 C1QTNF8P60827 252 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 GALNT2Q10471 571 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 CHSY3Q70JA7 882 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 OSTM1Q86WC4 334 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SPNS2Q8IVW8 549 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 ZNF786Q8N393 782 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 FIBCD1Q8N539 461 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 KLHL23Q8NBE8 558 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 OTUD5Q96G74 571 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 FAR2Q96K12 515 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SLC39A3Q9BRY0 314 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 TUT1Q9H6E5 874 aaKnown RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 EML4Q9HC35 981 aaKnown RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 WDR6Q9NNW5 1121 aaKnown RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 MRGBPQ9NV56 204 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 IPO11Q9UI26 975 aaKnown RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 FBXW11Q9UKB1 542 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 AURKCQ9UQB9 309 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 TLL2Q9Y6L7 1015 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 NUP205Q92621 2012 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SHROOM3Q8TF72 1996 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 DNAJC25-GNG10A0A024R161 153 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 YJEFN3A6XGL0 299 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SOCS2O14508 198 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 NRP2O60462 931 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 DNAJB1P25685 340 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SLC1A2P43004 574 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SLC7A2P52569 658 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 TUBA4AP68366 448 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 CCNA1P78396 465 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SEMA3BQ13214 749 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 GRIK4Q16099 956 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 ACBD5Q5T8D3 534 aaPredicted RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 ZNF470Q6ECI4 717 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 TTC33Q6PID6 262 aaPredicted RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 KDELC2Q7Z4H8 507 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 PPHLN1Q8NEY8 458 aaKnown RBP14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 OR9I1Q8NGQ6 314 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 HM13Q8TCT9 377 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 CANT1Q8WVQ1 401 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 NTAN1Q96AB6 310 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 PHF21BQ96EK2 531 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 TBL1YQ9BQ87 522 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 SLC25A23Q9BV35 468 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 ANKRD60Q9BZ19 345 aa14.09□□□□□ -0.15
VPS9D1-202ENST00000561976 A0A087X1B8 175 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 SMIM28A0A1B0GU29 152 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 DFFAO00273 331 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 PSMD3O43242 534 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 SEC24DO94855 1032 aaPredicted RBP14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 FYNP06241 537 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 IMPDH2P12268 514 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 CD151P48509 253 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 AIF1P55008 147 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 NUP107P57740 925 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 PRKCQQ04759 706 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 SEPT6Q14141 434 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 INTS6LQ5JSJ4 861 aaKnown RBP14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 NOTUMQ6P988 496 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 CLEC20AQ6ZU45 233 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 CUZD1Q86UP6 607 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 ZNF513Q8N8E2 541 aaPredicted RBP14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 DCUN1D5Q9BTE7 237 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 FICDQ9BVA6 458 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 TNFRSF12AQ9NP84 129 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 GDAP2Q9NXN4 497 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 OR12D3Q9UGF7 316 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 SLC2A6Q9UGQ3 507 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 AAR2Q9Y312 384 aaKnown RBP14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 PLXNA1Q9UIW2 1896 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 ATP6AP2A0A1C7CYW4 349 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 ATP6AP2O75787 350 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 DNAJB2P25686 324 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 PNPLA4P41247 253 aa14.08□□□□□ -0.16
VPS9D1-202ENST00000561976 HCAR3P49019 387 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms