RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 HOOK2Q96ED9 719 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 RAX2Q96IS3 184 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SERPINB12Q96P63 405 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 AGPAT1Q99943 283 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 MOV10L1Q9BXT6 1211 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 ROPN1BQ9BZX4 212 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 THAP2Q9H0W7 228 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 STMN4Q9H169 189 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 CDC42EP4Q9H3Q1 356 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 MS4A5Q9H3V2 200 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ST6GALNAC4Q9H4F1 302 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 CXorf56Q9H5V9 222 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 AZI2Q9H6S1 392 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 LRRC19Q9H756 370 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 EBF2Q9HAK2 575 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ROPN1Q9HAT0 212 aaPredicted RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 PARVGQ9HBI0 331 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 SERTAD4Q9NUC0 356 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TXLNGQ9NUQ3 528 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 DONSONQ9NYP3 566 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 TAS2R14Q9NYV8 317 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 UVRAGQ9P2Y5 699 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 MTRF1LQ9UGC7 380 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 NOCTQ9UK39 431 aaKnown RBP2.59□□□□□ -1.99
SPG11-223ENST00000560858 DNAJC12Q9UKB3 198 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 GTF3C4Q9UKN8 822 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 COG5Q9UP83 839 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ATP8A1Q9Y2Q0 1164 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 COQ4Q9Y3A0 265 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PCDHA1Q9Y5I3 950 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 ALG6Q9Y672 507 aa2.59□□□□□ -1.99
SPG11-223ENST00000560858 PASKQ96RG2 1323 aa2.59□□□□□ -2
SPG11-223ENST00000560858 COL4A5P29400 1685 aa2.58□□□□□ -2
SPG11-223ENST00000560858 A0A1B0GUA9 196 aa2.58□□□□□ -2
SPG11-223ENST00000560858 TCRBV7S2A1N4TA0A589 114 aa2.58□□□□□ -2
SPG11-223ENST00000560858 DDTLA6NHG4 134 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 VWC2LB2RUY7 222 aa2.58□□□□□ -2
SPG11-223ENST00000560858 K7ENM7 598 aa2.58□□□□□ -2
SPG11-223ENST00000560858 RASGRF2O14827 1237 aa2.58□□□□□ -2
SPG11-223ENST00000560858 LIN7AO14910 233 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 CLIC2O15247 247 aa2.58□□□□□ -2
SPG11-223ENST00000560858 RGS16O15492 202 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 MARCH6O60337 910 aa2.58□□□□□ -2
SPG11-223ENST00000560858 KPNA6O60684 536 aa2.58□□□□□ -2
SPG11-223ENST00000560858 PLA2G6O60733 806 aa2.58□□□□□ -2
SPG11-223ENST00000560858 RTN2O75298 545 aa2.58□□□□□ -2
SPG11-223ENST00000560858 ENTPD3O75355 529 aa2.58□□□□□ -2
SPG11-223ENST00000560858 DNAJB5O75953 348 aa2.58□□□□□ -2
SPG11-223ENST00000560858 SLITRK3O94933 977 aa2.58□□□□□ -2
SPG11-223ENST00000560858 SERPINB2P05120 415 aa2.58□□□□□ -2
SPG11-223ENST00000560858 ALPLP05186 524 aa2.58□□□□□ -2
SPG11-223ENST00000560858 ADRB2P07550 413 aa2.58□□□□□ -2
SPG11-223ENST00000560858 VIL1P09327 827 aaKnown RBP2.58□□□□□ -2
SPG11-223ENST00000560858 KRT13P13646 458 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CCNB1P14635 433 aa2.58□□□□□ -2
SPG11-223ENST00000560858 EZRP15311 586 aaKnown RBP2.58□□□□□ -2
SPG11-223ENST00000560858 NQO1P15559 274 aaKnown RBP2.58□□□□□ -2
SPG11-223ENST00000560858 PPP3CBP16298 524 aa2.58□□□□□ -2
SPG11-223ENST00000560858 NDUFB7P17568 137 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CHRNB2P17787 502 aa2.58□□□□□ -2
SPG11-223ENST00000560858 ABCB4P21439 1286 aa2.58□□□□□ -2
SPG11-223ENST00000560858 TNFAIP3P21580 790 aa2.58□□□□□ -2
SPG11-223ENST00000560858 IVDP26440 423 aa2.58□□□□□ -2
SPG11-223ENST00000560858 ATP5DP30049 168 aa2.58□□□□□ -2
SPG11-223ENST00000560858 NMT1P30419 496 aaKnown RBP2.58□□□□□ -2
SPG11-223ENST00000560858 MAN1A1P33908 653 aa2.58□□□□□ -2
SPG11-223ENST00000560858 RDXP35241 583 aaKnown RBP2.58□□□□□ -2
SPG11-223ENST00000560858 COPB2P35606 906 aa2.58□□□□□ -2
SPG11-223ENST00000560858 COILP38432 576 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 THBS3P49746 956 aa2.58□□□□□ -2
SPG11-223ENST00000560858 MXI1P50539 228 aa2.58□□□□□ -2
SPG11-223ENST00000560858 HSD17B4P51659 736 aa2.58□□□□□ -2
SPG11-223ENST00000560858 VAMP7P51809 220 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CCNG1P51959 295 aa2.58□□□□□ -2
SPG11-223ENST00000560858 STAT2P52630 851 aa2.58□□□□□ -2
SPG11-223ENST00000560858 SLC8A3P57103 927 aa2.58□□□□□ -2
SPG11-223ENST00000560858 GPC5P78333 572 aa2.58□□□□□ -2
SPG11-223ENST00000560858 FMO1Q01740 532 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CYP4A11Q02928 519 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CAV1Q03135 178 aa2.58□□□□□ -2
SPG11-223ENST00000560858 PPP3CAQ08209 521 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CCDC15Q0P6D6 951 aa2.58□□□□□ -2
SPG11-223ENST00000560858 BNIP1Q12981 228 aa2.58□□□□□ -2
SPG11-223ENST00000560858 KLF1Q13351 362 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 PRPF4BQ13523 1007 aaKnown RBP2.58□□□□□ -2
SPG11-223ENST00000560858 ERV3-1Q14264 604 aa2.58□□□□□ -2
SPG11-223ENST00000560858 SLC29A2Q14542 456 aa2.58□□□□□ -2
SPG11-223ENST00000560858 ZNF268Q14587 947 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 CRYMQ14894 314 aa2.58□□□□□ -2
SPG11-223ENST00000560858 RASA2Q15283 850 aa2.58□□□□□ -2
SPG11-223ENST00000560858 PTPROQ16827 1216 aa2.58□□□□□ -2
SPG11-223ENST00000560858 SHROOM1Q2M3G4 852 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 ZC2HC1CQ53FD0 456 aaPredicted RBP2.58□□□□□ -2
SPG11-223ENST00000560858 ZNF628Q5EBL2 1059 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CMPK2Q5EBM0 449 aa2.58□□□□□ -2
SPG11-223ENST00000560858 BROXQ5VW32 411 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CGB2Q6NT52 195 aa2.58□□□□□ -2
SPG11-223ENST00000560858 CCDC137Q6PK04 289 aaKnown RBP2.58□□□□□ -2
SPG11-223ENST00000560858 CATSPERGQ6ZRH7 1159 aa2.58□□□□□ -2
SPG11-223ENST00000560858 RGS9BPQ6ZS82 235 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms