RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 GAREM1Q9H706 876 aa8.79□□□□□ -1
USP3-208ENST00000558285 DDX56Q9NY93 547 aaKnown RBP8.79□□□□□ -1
USP3-208ENST00000558285 DKK3Q9UBP4 350 aa8.79□□□□□ -1
USP3-208ENST00000558285 APOBEC2Q9Y235 224 aaKnown RBP8.79□□□□□ -1
USP3-208ENST00000558285 ANKRD6Q9Y2G4 727 aa8.79□□□□□ -1
USP3-208ENST00000558285 FCF1Q9Y324 198 aaKnown RBP8.79□□□□□ -1
USP3-208ENST00000558285 MFHAS1Q9Y4C4 1052 aa8.79□□□□□ -1
USP3-208ENST00000558285 RALGAPA1Q6GYQ0 2036 aa8.79□□□□□ -1
USP3-208ENST00000558285 H3BM21 787 aa8.78□□□□□ -1
USP3-208ENST00000558285 LATO43561 262 aa8.78□□□□□ -1
USP3-208ENST00000558285 PRAMEF11O60813 436 aa8.78□□□□□ -1
USP3-208ENST00000558285 KCNK5O95279 499 aa8.78□□□□□ -1
USP3-208ENST00000558285 ADRB3P13945 408 aa8.78□□□□□ -1
USP3-208ENST00000558285 VAV1P15498 845 aa8.78□□□□□ -1
USP3-208ENST00000558285 HNRNPA2B1P22626 353 aaKnown RBP8.78□□□□□ -1
USP3-208ENST00000558285 GRK6P43250 576 aa8.78□□□□□ -1
USP3-208ENST00000558285 NSUN2Q08J23 767 aaKnown RBP eCLIP8.78□□□□□ -1
USP3-208ENST00000558285 ZNF423Q2M1K9 1284 aa8.78□□□□□ -1
USP3-208ENST00000558285 HLA-BQ31612 363 aa8.78□□□□□ -1
USP3-208ENST00000558285 AGBL4Q5VU57 503 aa8.78□□□□□ -1
USP3-208ENST00000558285 TTC7BQ86TV6 843 aa8.78□□□□□ -1
USP3-208ENST00000558285 VSIG1Q86XK7 387 aa8.78□□□□□ -1
USP3-208ENST00000558285 PYROXD2Q8N2H3 581 aa8.78□□□□□ -1
USP3-208ENST00000558285 SPC24Q8NBT2 197 aa8.78□□□□□ -1
USP3-208ENST00000558285 DENND6BQ8NEG7 585 aa8.78□□□□□ -1
USP3-208ENST00000558285 CXorf40AQ8TE69 158 aa8.78□□□□□ -1
USP3-208ENST00000558285 SETD7Q8WTS6 366 aaKnown RBP8.78□□□□□ -1
USP3-208ENST00000558285 ASB12Q8WXK4 309 aa8.78□□□□□ -1
USP3-208ENST00000558285 FAM131CQ96AQ9 280 aa8.78□□□□□ -1
USP3-208ENST00000558285 KLHDC7BQ96G42 594 aa8.78□□□□□ -1
USP3-208ENST00000558285 PANX2Q96RD6 677 aa8.78□□□□□ -1
USP3-208ENST00000558285 ERVMER34-1Q9H9K5 563 aa8.78□□□□□ -1
USP3-208ENST00000558285 TM7SF3Q9NS93 570 aa8.78□□□□□ -1
USP3-208ENST00000558285 AMACRQ9UHK6 382 aa8.78□□□□□ -1
USP3-208ENST00000558285 IPO11Q9UI26 975 aaKnown RBP8.78□□□□□ -1
USP3-208ENST00000558285 A0A1B0GVT2 93 aa8.77□□□□□ -1
USP3-208ENST00000558285 A0A1W2PQU0 124 aa8.77□□□□□ -1
USP3-208ENST00000558285 C16orf96A6NNT2 1141 aa8.77□□□□□ -1
USP3-208ENST00000558285 ZNF487B1APH4 448 aa8.77□□□□□ -1
USP3-208ENST00000558285 K7ERQ8 282 aa8.77□□□□□ -1
USP3-208ENST00000558285 TLR4O00206 839 aa8.77□□□□□ -1
USP3-208ENST00000558285 FPGTO14772 594 aa8.77□□□□□ -1
USP3-208ENST00000558285 SMAD6O43541 496 aaKnown RBP8.77□□□□□ -1
USP3-208ENST00000558285 SPOPO43791 374 aa8.77□□□□□ -1
USP3-208ENST00000558285 IGHV4-34P06331 123 aa8.77□□□□□ -1
USP3-208ENST00000558285 RARAP10276 462 aa8.77□□□□□ -1
USP3-208ENST00000558285 DRD3P35462 400 aa8.77□□□□□ -1
USP3-208ENST00000558285 MAGEA1P43355 309 aa8.77□□□□□ -1
USP3-208ENST00000558285 CSNK1EP49674 416 aaKnown RBP8.77□□□□□ -1
USP3-208ENST00000558285 PAPOLAP51003 745 aaKnown RBP8.77□□□□□ -1
USP3-208ENST00000558285 ADKP55263 362 aaKnown RBP8.77□□□□□ -1
USP3-208ENST00000558285 BCL2L1Q07817 233 aa8.77□□□□□ -1
USP3-208ENST00000558285 PTK2BQ14289 1009 aa8.77□□□□□ -1
USP3-208ENST00000558285 LRRC38Q5VT99 294 aa8.77□□□□□ -1
USP3-208ENST00000558285 RHOT1Q8IXI2 618 aa8.77□□□□□ -1
USP3-208ENST00000558285 KCTD15Q96SI1 283 aaPredicted RBP8.77□□□□□ -1
USP3-208ENST00000558285 BRD8Q9H0E9 1235 aa8.77□□□□□ -1
USP3-208ENST00000558285 CXorf56Q9H5V9 222 aa8.77□□□□□ -1
USP3-208ENST00000558285 LRRC19Q9H756 370 aa8.77□□□□□ -1
USP3-208ENST00000558285 GPATCH2LQ9NWQ4 482 aa8.77□□□□□ -1
USP3-208ENST00000558285 IMPACTQ9P2X3 320 aa8.77□□□□□ -1
USP3-208ENST00000558285 DNPEPQ9ULA0 475 aa8.77□□□□□ -1
USP3-208ENST00000558285 HS3ST3A1Q9Y663 406 aa8.77□□□□□ -1
USP3-208ENST00000558285 WASF2Q9Y6W5 498 aa8.77□□□□□ -1
USP3-208ENST00000558285 MUC22E2RYF6 1773 aaPredicted RBP8.77□□□□□ -1.01
USP3-208ENST00000558285 NEMP2A6NFY4 417 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 A6NNZ2 444 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 CDX4O14627 284 aaPredicted RBP8.77□□□□□ -1.01
USP3-208ENST00000558285 PCDHGA12O60330 932 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 UGT2B4P06133 528 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 ITGAVP06756 1048 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 ALPPL2P10696 532 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 GLDCP23378 1020 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 GJC1P36383 396 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 RABIFP47224 123 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 NUMBP49757 651 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 NAP1L1P55209 391 aaKnown RBP8.77□□□□□ -1.01
USP3-208ENST00000558285 TUBB4BP68371 445 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 DPYSQ14117 519 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 TFDP2Q14188 446 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 MESDQ14696 234 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 LBRQ14739 615 aaKnown RBP8.77□□□□□ -1.01
USP3-208ENST00000558285 SMTNL2Q2TAL5 461 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 POM121L1PQ3SYA9 428 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 KCNT1Q5JUK3 1230 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 PIP5KL1Q5T9C9 394 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 MARC1Q5VT66 337 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 PSAPL1Q6NUJ1 521 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 NAXDQ8IW45 347 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 CNPY4Q8N129 248 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 CHST14Q8NCH0 376 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 IFT43Q96FT9 208 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 CELF6Q96J87 481 aaKnown RBP8.77□□□□□ -1.01
USP3-208ENST00000558285 CSPG4P5Q96PW8 444 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 ELF4Q99607 663 aaPredicted RBP8.77□□□□□ -1.01
USP3-208ENST00000558285 CD93Q9NPY3 652 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 NCKIPSDQ9NZQ3 722 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 SERGEFQ9UGK8 458 aa8.77□□□□□ -1.01
USP3-208ENST00000558285 EML5Q05BV3 1969 aa8.76□□□□□ -1.01
USP3-208ENST00000558285 CFAP69A5D8W1 941 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms