RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 FYNP06241 537 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 HDCP19113 662 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 AKAP5P24588 427 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 TAS2R39P59534 338 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 POU6F1Q14863 301 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 NOTUMQ6P988 496 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 OTOP3Q7RTS5 596 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 CROCCP3Q8IVE0 287 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 FIBCD1Q8N539 461 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 CSADQ9Y600 493 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 TSC2P49815 1807 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 NUP205Q92621 2012 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 NEMP2A6NFY4 417 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 ASB14A6NK59 587 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 H3BRB1 525 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 NRP1O14786 923 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 SRP72O76094 671 aaKnown RBP17.7■□□□□ 0.42
SYNE3-202ENST00000553340 NUP107P57740 925 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 ESRRGP62508 458 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 CCNA1P78396 465 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 SV2CQ496J9 727 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 NHSL2Q5HYW2 709 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 FAM45BPQ6NSW5 357 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 PPP4R4Q6NUP7 873 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 KLHL35Q6PF15 583 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 CLEC20AQ6ZU45 233 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 DHFR2Q86XF0 187 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 ANKFN1Q8N957 763 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 FAM45AQ8TCE6 357 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 CCDC126Q96EE4 140 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 C16orf70Q9BSU1 422 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 TUT1Q9H6E5 874 aaKnown RBP17.7■□□□□ 0.42
SYNE3-202ENST00000553340 TMEM181Q9P2C4 612 aa17.7■□□□□ 0.42
SYNE3-202ENST00000553340 TNS1Q9HBL0 1735 aaKnown RBP17.7■□□□□ 0.42
SYNE3-202ENST00000553340 SMIM28A0A1B0GU29 152 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 FZD9O00144 591 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 NRP2O60462 931 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 CKMT2P17540 419 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 EPHX2P34913 555 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 C1QTNF8P60827 252 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 EN1Q05925 392 aaPredicted RBP17.69■□□□□ 0.42
SYNE3-202ENST00000553340 GRIK4Q16099 956 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 MAP7D1Q3KQU3 841 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 C6orf10Q5SRN2 563 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 IRAK1BP1Q5VVH5 260 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 DHRS4L2Q6PKH6 230 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 LAYNQ6UX15 382 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 LIMS2Q7Z4I7 341 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 OSTM1Q86WC4 334 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 RBM12BQ8IXT5 1001 aaKnown RBP17.69■□□□□ 0.42
SYNE3-202ENST00000553340 FAM47BQ8NA70 645 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 KLHL23Q8NBE8 558 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 PPHLN1Q8NEY8 458 aaKnown RBP17.69■□□□□ 0.42
SYNE3-202ENST00000553340 PPTC7Q8NI37 304 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 TBL1YQ9BQ87 522 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 MED10Q9BTT4 135 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 CDHR5Q9HBB8 845 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 VPS45Q9NRW7 570 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 DDIT4Q9NX09 232 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 DUS2Q9NX74 493 aaKnown RBP17.69■□□□□ 0.42
SYNE3-202ENST00000553340 RBPJLQ9UBG7 517 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 AKAP10O43572 662 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 XPOTO43592 962 aaKnown RBP17.69■□□□□ 0.42
SYNE3-202ENST00000553340 TIPRLO75663 272 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 BMP2P12643 396 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 SLC1A2P43004 574 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 CD151P48509 253 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 TMEM62Q0P6H9 643 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 MARCH8Q5T0T0 291 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 ESRP1Q6NXG1 681 aaKnown RBP17.69■□□□□ 0.42
SYNE3-202ENST00000553340 GPR141Q7Z602 305 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 FNDC8Q8TC99 324 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 USP33Q8TEY7 942 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 TFAP2CQ92754 450 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 ULBP1Q9BZM6 244 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 CHST12Q9NRB3 414 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 OR12D3Q9UGF7 316 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 SBF1O95248 1867 aa17.69■□□□□ 0.42
SYNE3-202ENST00000553340 YJEFN3A6XGL0 299 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PLOD2O00469 737 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 NCAM1P13591 858 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ARCN1P48444 511 aaKnown RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 CDH15P55291 814 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 MAP3K7CLP57077 242 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 POU4F1Q01851 419 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PRKCQQ04759 706 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 CSHL1Q14406 222 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PPP1R3AQ16821 1122 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 FAM83EQ2M2I3 478 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 HACD2Q6Y1H2 254 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PAQR9Q6ZVX9 377 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 CUZD1Q86UP6 607 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 SPATA22Q8NHS9 363 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 TCF12Q99081 682 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 MRM3Q9HC36 420 aaKnown RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 CYP4F12Q9HCS2 524 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 TUBA8Q9NY65 449 aaPredicted RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 KLK14Q9P0G3 267 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 HEMK1Q9Y5R4 338 aaPredicted RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 A0A087WXM4 84 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms