RNA–Protein interactions for RNA: ENST00000527881.1

TSKU-203, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TSKU, Length 3,554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-203ENST00000527881 MPP1Q00013 466 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 CNTN2Q02246 1040 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 POU5F1BQ06416 359 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 CAPRIN1Q14444 709 aaKnown RBP12.6□□□□□ -0.39
TSKU-203ENST00000527881 INTS11Q5TA45 600 aaKnown RBP12.6□□□□□ -0.39
TSKU-203ENST00000527881 TTC30BQ8N4P2 665 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 CEP295NLQ96MC4 621 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 CSF3RQ99062 836 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 LGMNQ99538 433 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 SLC25A23Q9BV35 468 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 SNRNP25Q9BV90 132 aaKnown RBP12.6□□□□□ -0.39
TSKU-203ENST00000527881 NEK6Q9HC98 313 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 COL20A1Q9P218 1284 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 CTDP1Q9Y5B0 961 aaPredicted RBP12.6□□□□□ -0.39
TSKU-203ENST00000527881 IL7RP16871 459 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 JAG1P78504 1218 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 GRSF1Q12849 480 aaKnown RBP eCLIP12.6□□□□□ -0.39
TSKU-203ENST00000527881 IFRD2Q12894 506 aaPredicted RBP12.6□□□□□ -0.39
TSKU-203ENST00000527881 LAMC2Q13753 1193 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 PPP1R3AQ16821 1122 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 C6orf10Q5SRN2 563 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 C4orf22Q6V702 233 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 RNF135Q8IUD6 432 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 MIR1-1HGQ9H1L0 117 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 RMND5AQ9H871 391 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 IARS2Q9NSE4 1012 aaKnown RBP12.6□□□□□ -0.39
TSKU-203ENST00000527881 GIMAP4Q9NUV9 329 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 SYCE1LA8MT33 242 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 CCRL2O00421 344 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 DLGAP1O14490 977 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 DGAT1O75907 488 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 LYPLA2O95372 231 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 SDC4P31431 198 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 MAGEA3P43357 314 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 LIMK2P53671 638 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 ECT2LQ008S8 904 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 IFITM3Q01628 133 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 E2F2Q14209 437 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 BOLA3Q53S33 107 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 KIAA0408Q6ZU52 694 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 FAM35AQ86V20 835 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 ARMC8Q8IUR7 673 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 SGCDQ92629 289 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 SH3GL1Q99961 368 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 APOL2Q9BQE5 337 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 SEZ6LQ9BYH1 1024 aa12.6□□□□□ -0.39
TSKU-203ENST00000527881 CCM2LQ9NUG4 571 aaPredicted RBP12.6□□□□□ -0.39
TSKU-203ENST00000527881 C16orf96A6NNT2 1141 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 TRIM24O15164 1050 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 RAD51BO15315 384 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 APOA4P06727 396 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 MTHFD1P11586 935 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 CDH1P12830 882 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 PSMB4P28070 264 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 OXTRP30559 389 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 DUOXA2Q1HG44 320 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ZYG11AQ6WRX3 759 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 IQCF2Q8IXL9 164 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 OR7G1Q8NGA0 311 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 CPB2Q96IY4 423 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 NTPCRQ9BSD7 190 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 TRIT1Q9H3H1 467 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 MOV10Q9HCE1 1003 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 CHRAC1Q9NRG0 131 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 XPR1Q9UBH6 696 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 PCDHA10Q9Y5I2 948 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ANKRD12Q6UB98 2062 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 SDHDO14521 159 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ALDH1A2O94788 518 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 IL18RAPO95256 599 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 SEC24AO95486 1093 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 LDLRP01130 860 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 GSNP06396 782 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 IST1P53990 364 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 NAB1Q13506 487 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 RPS6KA2Q15349 733 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 TMEM236Q5W0B7 351 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ATP6V0D2Q8N8Y2 350 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ANKRD52Q8NB46 1076 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ACVR1CQ8NER5 493 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 OR52K1Q8NGK4 314 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 PNPT1Q8TCS8 783 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 USP33Q8TEY7 942 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 HTR3CQ8WXA8 447 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 VPS39Q96JC1 886 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ZFYVE19Q96K21 471 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 ZNF641Q96N77 438 aaPredicted RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 NAT9Q9BTE0 207 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 POLRMTO00411 1230 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 CCNKO75909 580 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 CABYRO75952 493 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 UGT2B4P06133 528 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 PTPN2P17706 415 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 POLR2EP19388 210 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 ENDOUP21128 410 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 CLK3P49761 638 aaKnown RBP12.59□□□□□ -0.39
TSKU-203ENST00000527881 PLK1P53350 603 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 LRP8Q14114 963 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 SQLEQ14534 574 aa12.59□□□□□ -0.39
TSKU-203ENST00000527881 FUT11Q495W5 492 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms