RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PKN3Q6P5Z2 889 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 ETFBKMTQ8IXQ9 262 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 SH2D3CQ8N5H7 860 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 ISG20Q96AZ6 181 aaKnown RBP21.23■□□□□ 0.99
VPS28-208ENST00000527797 ZNF669Q96BR6 464 aaPredicted RBP21.23■□□□□ 0.99
VPS28-208ENST00000527797 NSMCE3Q96MG7 304 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 TDRD1Q9BXT4 1180 aaKnown RBP21.23■□□□□ 0.99
VPS28-208ENST00000527797 NOVA2Q9UNW9 492 aaKnown RBP21.23■□□□□ 0.99
VPS28-208ENST00000527797 SLC27A6Q9Y2P4 619 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 RAI2Q9Y5P3 530 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 FAM169AQ9Y6X4 670 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 SOX1O00570 391 aaPredicted RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 IGSF6O95976 241 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 GCAP28676 217 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 ATP5DP30049 168 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 MSH2P43246 934 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 RUNX3Q13761 415 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 RASA2Q15283 850 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 GEN1Q17RS7 908 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 CES3Q6UWW8 571 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 MTSS1LQ765P7 747 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 C12orf40Q86WS4 652 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.22■□□□□ 0.99
VPS28-208ENST00000527797 MRRFQ96E11 262 aaKnown RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 TRIB3Q96RU7 358 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 CEP44Q9C0F1 390 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 MRM3Q9HC36 420 aaKnown RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 LGALS13Q9UHV8 139 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 ERVW-1Q9UQF0 538 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 CHKBQ9Y259 395 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 TCAF1Q9Y4C2 921 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 USP15Q9Y4E8 981 aaPredicted RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 PCDHGC4Q9Y5F7 938 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 PRRC2BQ5JSZ5 2229 aaKnown RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 OTOL1A6NHN0 477 aaPredicted RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 ALADP13716 330 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 SNRPD1P62314 119 aaKnown RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 FRG1Q14331 258 aaKnown RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 ACCSLQ4AC99 568 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 DGKKQ5KSL6 1271 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 TMEM215Q68D42 235 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 C22orf39Q6P5X5 142 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 TRMT10BQ6PF06 316 aaKnown RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 CTAGE3PQ8IX95 158 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 OR2AP1Q8NGE2 309 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 SUSD6Q92537 303 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 FGF14Q92915 247 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 FCRL3Q96P31 734 aaPredicted RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 RANBP9Q96S59 729 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 PAFAH2Q99487 392 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 PSMC3IPQ9P2W1 217 aaPredicted RBP21.22■□□□□ 0.99
VPS28-208ENST00000527797 DEC1Q9P2X7 70 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 CTNNAL1Q9UBT7 734 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 IKBKGQ9Y6K9 419 aa21.22■□□□□ 0.99
VPS28-208ENST00000527797 PDE4DIPQ5VU43 2346 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 TNRC18O15417 2968 aaPredicted RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 HEATR9A2RTY3 570 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 FAM159BA6NKW6 160 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 ZNF821O75541 412 aaPredicted RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 PIAS1O75925 651 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 C1QAP02745 245 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 ATP5BP06576 529 aaKnown RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 MSLNQ13421 630 aaPredicted RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 SEPT6Q14141 434 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 GALNT3Q14435 633 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 GAB4Q2WGN9 574 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 GRAMD4Q6IC98 578 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 ZNF449Q6P9G9 518 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 PCDH20Q8N6Y1 951 aaKnown RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 CDKL2Q92772 493 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 TLCD1Q96CP7 247 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 RMDN1Q96DB5 314 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 MFSD3Q96ES6 412 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 DHRS4Q9BTZ2 278 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 TRMT61BQ9BVS5 477 aaKnown RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 ADGRE3Q9BY15 652 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 TNKS2Q9H2K2 1166 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 PPANQ9NQ55 473 aaKnown RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 EURLQ9NYK6 297 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 EPS15L1Q9UBC2 864 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 PRKAG3Q9UGI9 489 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 TBK1Q9UHD2 729 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 EVLQ9UI08 416 aaPredicted RBP21.21■□□□□ 0.99
VPS28-208ENST00000527797 SLCO3A1Q9UIG8 710 aa21.21■□□□□ 0.99
VPS28-208ENST00000527797 LAMA3Q16787 3333 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 ZCWPW2A0A1B0GU75 182 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 POLR3GO15318 223 aaPredicted RBP21.2■□□□□ 0.98
VPS28-208ENST00000527797 GSRP00390 522 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 ASLP04424 464 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 NMBRP28336 390 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 GDI1P31150 447 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 NNMTP40261 264 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 SLC6A11P48066 632 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 TRAF2Q12933 501 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 LAMB3Q13751 1172 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 DLG2Q15700 870 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 TNFAIP8L3Q5GJ75 292 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 ADGRD1Q6QNK2 874 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 LRRC6Q86X45 466 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms