RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CAMK4Q16566 473 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 HSP90AA4PQ58FG1 418 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 KLHDC7AQ5VTJ3 777 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 LRRC31Q6UY01 552 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 ZSWIM9Q86XI8 627 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 KYQ8NBH2 561 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 TMEM35BQ8NCS4 154 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 OR2AP1Q8NGE2 309 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 GPT2Q8TD30 523 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 EPS8L1Q8TE68 723 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 NSMCE3Q96MG7 304 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 CCDC3Q9BQI4 270 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 METTL5Q9NRN9 209 aaKnown RBP14.47□□□□□ -0.09
CPSF1-201ENST00000526271 TMEM248Q9NWD8 314 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 APOBEC3BQ9UH17 382 aaKnown RBP14.47□□□□□ -0.09
CPSF1-201ENST00000526271 COQ6Q9Y2Z9 468 aa14.47□□□□□ -0.09
CPSF1-201ENST00000526271 SDK2Q58EX2 2172 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 KRIT1O00522 736 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 TNFSF15O95150 251 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 GSRP00390 522 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 HDAC4P56524 1084 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 CCDC15Q0P6D6 951 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 IRF4Q15306 451 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 ALG11Q2TAA5 492 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 MYLK3Q32MK0 819 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 ARL13BQ3SXY8 428 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 HS1BP3Q53T59 392 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 NAA35Q5VZE5 725 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 SMYD5Q6GMV2 418 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 FOXR1Q6PIV2 292 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 ARCQ7LC44 396 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 TMPRSS9Q7Z410 1059 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 PYROXD2Q8N2H3 581 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 RXFP2Q8WXD0 754 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 CENPIQ92674 756 aaPredicted RBP14.46□□□□□ -0.09
CPSF1-201ENST00000526271 IL12RB2Q99665 862 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 SPASTQ9UBP0 616 aa14.46□□□□□ -0.09
CPSF1-201ENST00000526271 C2CD4BA6NLJ0 364 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 H3BM21 787 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 EPHB6O15197 1021 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 TCEA3O75764 348 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 TMCC1O94876 653 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 GM2AP17900 193 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 PTMSP20962 102 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 EIF4A3P38919 411 aaKnown RBP14.45□□□□□ -0.1
CPSF1-201ENST00000526271 KLK7P49862 253 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 CCL7P80098 99 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 FMO1Q01740 532 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 MAN2A1Q16706 1144 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 CDO1Q16878 200 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 WSCD2Q2TBF2 565 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 VWA3BQ502W6 1294 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 BROXQ5VW32 411 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 MACC1Q6ZN28 852 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 WDR36Q8NI36 951 aaKnown RBP14.45□□□□□ -0.1
CPSF1-201ENST00000526271 PCDH19Q8TAB3 1148 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 TSACCQ96A04 125 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-201ENST00000526271 RAB7BQ96AH8 199 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 MED8Q96G25 268 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 TBATAQ96M53 351 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 PCDHB18PQ96TA0 734 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 EPAS1Q99814 870 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 FOXP3Q9BZS1 431 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 GANQ9H2C0 597 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 NDST4Q9H3R1 872 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 LHX3Q9UBR4 397 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 OR12D3Q9UGF7 316 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 PADI4Q9UM07 663 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 DOPEY2Q9Y3R5 2298 aa14.45□□□□□ -0.1
CPSF1-201ENST00000526271 NBASA2RRP1 2371 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 CCDC187A0A096LP49 1063 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 CXorf51AA0A1B0GTR3 108 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 PIGNO95427 931 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 FGFR1OPO95684 399 aaKnown RBP14.44□□□□□ -0.1
CPSF1-201ENST00000526271 MBD3O95983 291 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 CYP1A1P04798 512 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-201ENST00000526271 ITGA2BP08514 1039 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 UCHL3P15374 230 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 RHOQP17081 205 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 ITGB6P18564 788 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 RBMS1P29558 406 aaKnown RBP14.44□□□□□ -0.1
CPSF1-201ENST00000526271 ETV5P41161 510 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 MTIF2P46199 727 aaKnown RBP14.44□□□□□ -0.1
CPSF1-201ENST00000526271 NFKB2Q00653 900 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 SGCGQ13326 291 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 RAPGEF1Q13905 1077 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 CYTH1Q15438 398 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 NFKBIBQ15653 356 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 KLHL40Q2TBA0 621 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 DPCR1Q3MIW9 517 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 TMEM52BQ4KMG9 183 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 GDPD4Q6W3E5 623 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 PELI3Q8N2H9 469 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 RYBPQ8N488 228 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-201ENST00000526271 CCDC74AQ96AQ1 378 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 GRAMD1AQ96CP6 724 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 LIN37Q96GY3 246 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-201ENST00000526271 WRAP53Q9BUR4 548 aaKnown RBP14.44□□□□□ -0.1
CPSF1-201ENST00000526271 SIRPGQ9P1W8 387 aa14.44□□□□□ -0.1
CPSF1-201ENST00000526271 IPO11Q9UI26 975 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms