RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PDILTQ8N807 584 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 MPLKIPQ8TAP9 179 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 NEK9Q8TD19 979 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 USP6NLQ92738 828 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 FAM149B1Q96BN6 582 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 PERPQ96FX8 193 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 BBS4Q96RK4 519 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 SIN3AQ96ST3 1273 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 SDF4Q9BRK5 362 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 ITPAQ9BY32 194 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 LHPPQ9H008 270 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 CDT1Q9H211 546 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 MUC13Q9H3R2 512 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 MVB12BQ9H7P6 319 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 MAP6D1Q9H9H5 199 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 FZD3Q9NPG1 666 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 TRNAU1APQ9NX07 287 aaKnown RBP4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 TUBA8Q9NY65 449 aaPredicted RBP4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 EHD2Q9NZN4 543 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 HEY2Q9UBP5 337 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 HAO1Q9UJM8 370 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 INTS6Q9UL03 887 aaKnown RBP4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 BTBD3Q9Y2F9 522 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 LYVE1Q9Y5Y7 322 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 RUSC2Q8N2Y8 1516 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 FAM237BA0A1B0GVD1 139 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 USP17L23D6RBM5 183 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 SNAP23O00161 211 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 GTPBP1O00178 669 aaKnown RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 TAF4O00268 1085 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 ATP2C2O75185 946 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 GFPT2O94808 682 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 NDUFB8O95169 186 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 MT-CYBP00156 380 aaPredicted RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 FGBP02675 491 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 LDHCP07864 332 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 MAPK4P31152 587 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 AVPR1AP37288 418 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 MLH1P40692 756 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 ME1P48163 572 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 ALDH7A1P49419 539 aaKnown RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 CDH12P55289 794 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 GOLGA8DPQ0D2H9 430 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 CAPSQ13938 189 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 RBMS2Q15434 407 aaKnown RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 MED22Q15528 200 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 EPHA10Q5JZY3 1008 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 PXDC1Q5TGL8 231 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 FAM205BPQ63HN1 556 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 SLC16A12Q6ZSM3 486 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 IKBIPQ70UQ0 350 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 FASTKD5Q7L8L6 764 aaKnown RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 TRAPPC11Q7Z392 1133 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 DHX40Q8IX18 779 aaKnown RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 ARFGAP1Q8N6T3 406 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 FRMD1Q8N878 549 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMEM116Q8NCL8 245 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 BICD2Q8TD16 824 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 CREB3L4Q8TEY5 395 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 GTF3C6Q969F1 213 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZC3HAV1LQ96H79 300 aaKnown RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 MAP7D2Q96T17 732 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 WDR77Q9BQA1 342 aaPredicted RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 KRTAP17-1Q9BYP8 105 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 KLHL31Q9H511 634 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 SEPT11Q9NVA2 429 aaKnown RBP4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 HCFC1R1Q9NWW0 138 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 NDRG3Q9UGV2 375 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 MKLN1Q9UL63 735 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 HS3ST3B1Q9Y662 390 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 CAPN7Q9Y6W3 813 aa4.25□□□□□ -1.73
HMGB1P28-201ENST00000507778 UTYO14607 1347 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 LIPT2A6NK58 231 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 HSPB2A8KAH6 182 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 NPIPB11E5RHQ5 1161 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 AP3D1O14617 1153 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 SEC14L5O43304 696 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 LIASO43766 372 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 HNRNPCL1O60812 293 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 CLDN7O95471 211 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 EIF2S1P05198 315 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 HOXB5P09067 269 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 TFPIP10646 304 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 CHRNB2P17787 502 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 SRD5A1P18405 259 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 PBX3P40426 434 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 ABCG1P45844 678 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 PPP3CCP48454 512 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 HDAC4P56524 1084 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 C21orf58P58505 322 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 SRSF1Q07955 248 aaKnown RBP eCLIP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 FRG1Q14331 258 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 LPIN1Q14693 890 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 HSPB2Q16082 182 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 Q5PR19 223 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 TTI2Q6NXR4 508 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 CYP20A1Q6UW02 462 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 CCDC129Q6ZRS4 1044 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 TDRPQ86YL5 185 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 DENND6AQ8IWF6 608 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms