RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 A0A1W2PQC6 194 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 GOLGA6L10A6NI86 522 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 C2CD4BA6NLJ0 364 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 TTC36A6NLP5 189 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 SIGLEC16A6NMB1 481 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 E9PAM4 449 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 GOLGA8SH3BPF8 625 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 VILLO15195 856 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 EPHB6O15197 1021 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 RTN2O75298 545 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CNTN5O94779 1100 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CALB1P05937 261 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 RHOCP08134 193 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 KRT3P12035 628 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 FERP16591 822 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 TCP1P17987 556 aaKnown RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 OR1E1P30953 314 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 SDC4P31431 198 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 NSFP46459 744 aaKnown RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CSNK1EP49674 416 aaKnown RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 STK19P49842 368 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 SH3BGRP55822 239 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 SIM1P81133 766 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 BNC1Q01954 994 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CENPCQ03188 943 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 PTP4A2Q12974 167 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 XRCC4Q13426 336 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 TRIP6Q15654 476 aaKnown RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ZNF423Q2M1K9 1284 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 KIF19Q2TAC6 998 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CCDC14Q49A88 953 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ACCSLQ4AC99 568 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ALFQ53S48 1182 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 C2CD6Q53TS8 623 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ARTNQ5T4W7 220 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 TRNP1Q6NT89 227 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 RETSATQ6NUM9 610 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 PPP1R2P3Q6NXS1 205 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 GLRX5Q86SX6 157 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CROCCP2Q86T23 111 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CIR1Q86X95 450 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-207ENST00000507401 AADATQ8N5Z0 425 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ZSCAN1Q8NBB4 408 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 TMIEQ8NEW7 156 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 TRIM58Q8NG06 486 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 OR52K2Q8NGK3 314 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 OR2I1PQ8NGU4 316 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 RXFP2Q8WXD0 754 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 VCPIP1Q96JH7 1222 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CCDC114Q96M63 670 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 CFAP57Q96MR6 1250 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 PCDHB18PQ96TA0 734 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 AGPAT1Q99943 283 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 PLCD4Q9BRC7 762 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ZYG11BQ9C0D3 744 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 MUC3BQ9H195 1237 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 GAREM1Q9H706 876 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 TM7SF3Q9NS93 570 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ADAM22Q9P0K1 906 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 OR12D3Q9UGF7 316 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 SERGEFQ9UGK8 458 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 ANKRD6Q9Y2G4 727 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 EPG5Q9HCE0 2579 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 DOCK4Q8N1I0 1966 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 KNL1Q8NG31 2342 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3DA0A087WVF3 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3IA0A087WXS9 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3EA0A087X179 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3KA0A087X1G2 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 A0A1B0GVT2 93 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3FA6NER0 549 aaPredicted RBP8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3LB9A6J9 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 C1QTNF3-AMACRE9PGA6 284 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 LATO43561 262 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 SH3BP5O60239 455 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 PCDHGA12O60330 932 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 RNGTTO60942 597 aaKnown RBP8.17□□□□□ -1.1
SCN1A-207ENST00000507401 SRGAP2O75044 1071 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 CBFA2T3O75081 653 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 DNAJC8O75937 253 aaPredicted RBP8.17□□□□□ -1.1
SCN1A-207ENST00000507401 NEBLO76041 1014 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 MT-CO1P00395 513 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3HP0C7X1 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 SRCP12931 536 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 RFC1P35251 1148 aaPredicted RBP8.17□□□□□ -1.1
SCN1A-207ENST00000507401 DRD3P35462 400 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 ETFBP38117 255 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 CTSKP43235 329 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 PSMD8P48556 350 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 RNF144AP50876 292 aaPredicted RBP8.17□□□□□ -1.1
SCN1A-207ENST00000507401 CLNS1AP54105 237 aaKnown RBP8.17□□□□□ -1.1
SCN1A-207ENST00000507401 ADPRHP54922 357 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 ATP11AP98196 1134 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 CLEC16AQ2KHT3 1053 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 FBXW10Q5XX13 1052 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3GQ6DHY5 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 TBC1D3CQ6IPX1 549 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 NEK5Q6P3R8 708 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 NCEH1Q6PIU2 408 aa8.17□□□□□ -1.1
SCN1A-207ENST00000507401 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms