RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C17orf102A2RUQ5 167 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SLCO1B7G3V0H7 640 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DFFAO00273 331 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 IGLV3-25P01717 112 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SRGAP2BP0DMP2 458 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 HOXC8P31273 242 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ADRA1AP35348 466 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CPT1AP50416 773 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MS4A2Q01362 244 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 HERC3Q15034 1050 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CNPY1Q3B7I2 92 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MMEL1Q495T6 779 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 UGT2A3Q6UWM9 527 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 BNC2Q6ZN30 1099 aaPredicted RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MARK4Q96L34 752 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SERPINI1Q99574 410 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GLOD4Q9HC38 313 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 C6orf203Q9P0P8 240 aaPredicted RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 NYNRINQ9P2P1 1898 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CAPN8A6NHC0 703 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TMEM233B4DJY2 109 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MSX2P35548 267 aaPredicted RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 POLD2P49005 469 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FOLH1Q04609 750 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PDK3Q15120 406 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 UGP2Q16851 508 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GRAMD1BQ3KR37 738 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RWDD4Q6NW29 188 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SETD3Q86TU7 594 aaPredicted RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PGAM4Q8N0Y7 254 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 IPMKQ8NFU5 416 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MIPOL1Q8TD10 442 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PDCD6IPQ8WUM4 868 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 LPPQ93052 612 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 OMDQ99983 421 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FICDQ9BVA6 458 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SPATA16Q9BXB7 569 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 UNKQ9C0B0 810 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ZBTB26Q9HCK0 441 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ARHGEF38Q9NXL2 777 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DTNAQ9Y4J8 743 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MAFKO60675 156 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 THP07101 528 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PKNOX1P55347 436 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SFSWAPQ12872 951 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TIGD5Q53EQ6 642 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SPNS2Q8IVW8 549 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ST13P4Q8IZP2 240 aaPredicted RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RNF34Q969K3 372 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MAELQ96JY0 434 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SLC39A8Q9C0K1 460 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SIK2Q9H0K1 926 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FAM105AQ9NUU6 356 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TCAF1Q9Y4C2 921 aa16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 COPG1Q9Y678 874 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TCAF2A6NFQ2 919 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 STX16-NPEPL1H3BU86 382 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 AP1G1O43747 822 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 STMN1P16949 149 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 BDNFP23560 247 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SLC1A2P43004 574 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PRMT2P55345 433 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TAS2R39P59534 338 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DYNC1I2Q13409 638 aaKnown RBP16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TLR1Q15399 786 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 NXNQ6DKJ4 435 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FAM171BQ6P995 826 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CCDC117Q8IWD4 279 aaPredicted RBP16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ARHGAP18Q8N392 663 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TXNDC5Q8NBS9 432 aaKnown RBP16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ICA1LQ8NDH6 482 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 NCSTNQ92542 709 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 USP13Q92995 863 aaPredicted RBP16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DCUN1D1Q96GG9 259 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GCNAQ96QF7 691 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SPC25Q9HBM1 224 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PAK6Q9NQU5 681 aaPredicted RBP16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TREX1Q9NSU2 369 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TMLHEQ9NVH6 421 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RIMS3Q9UJD0 308 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SCN10AQ9Y5Y9 1956 aa16.24■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CASTOR2A6NHX0 329 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SDHDO14521 159 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 NPHS1O60500 1241 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TADA2AO75478 443 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ANXA9O76027 345 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MRPS22P82650 360 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FLOT2Q14254 428 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CNGA3Q16281 694 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 COL13A1Q5TAT6 717 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MANEALQ5VSG8 457 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CCSAPQ6IQ19 270 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ZNF280DQ6N043 979 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SCML4Q8N228 414 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ATPAF2Q8N5M1 289 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CCNYL1Q8N7R7 359 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 C2CD4AQ8NCU7 369 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PPHLN1Q8NEY8 458 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 WDR41Q9HAD4 459 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MRM3Q9HC36 420 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms