RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DLGAP3O95886 979 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 JAK1P23458 1154 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SERPINB10P48595 397 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DAOAP59103 153 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 STX1BP61266 288 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF460Q14592 562 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TCEA2Q15560 299 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NFE2Q16621 373 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CMPK2Q5EBM0 449 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 VARS2Q5ST30 1063 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC7A6OSQ96CW6 309 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 VPS39Q96JC1 886 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SPATA13Q96N96 652 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 OSBPL6Q9BZF3 934 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TMLHEQ9NVH6 421 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PPM1HQ9ULR3 514 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MKI67P46013 3256 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 A0A087WXM4 84 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KPNA6O60684 536 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RNASEH1O60930 286 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZMPSTE24O75844 475 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DDHD2O94830 711 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZBTB11O95625 1053 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 F9P00740 461 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SERPINB5P36952 375 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC10A2Q12908 348 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DLG1Q12959 904 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NEDD8Q15843 81 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MARC1Q5VT66 337 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BNC2Q6ZN30 1099 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CCDC103Q8IW40 242 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF567Q8N184 647 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TOP6BLQ8N6T0 577 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC35B2Q8TB61 432 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 USP13Q92995 863 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AGAP2Q99490 1192 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ADAM7Q9H2U9 754 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GPAMQ9HCL2 828 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TBC1D13Q9NVG8 400 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DRG1Q9Y295 367 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GIT1Q9Y2X7 761 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PRR5-ARHGAP8B1AHC4 643 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TPP1O14773 563 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FAM189A1O60320 539 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 XPAP23025 273 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HALP42357 657 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ARHGAP8P85298 464 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CDH18Q13634 790 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FRA10AC1Q70Z53 315 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LRRC8DQ7L1W4 858 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CMASQ8NFW8 434 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 OR10T2Q8NGX3 314 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NKD2Q969F2 451 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 UTP4Q969X6 686 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 OMA1Q96E52 524 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NDFIP2Q9NV92 336 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HACD3Q9P035 362 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 VPS28Q9UK41 221 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ANKRD12Q6UB98 2062 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PRR23AA6NEV1 266 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ALOX15BO15296 676 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RAMP2O60895 175 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FBXO21O94952 628 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ITGBL1O95965 494 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CKBP12277 381 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CLDN10P78369 228 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KLF1Q13351 362 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GALNT3Q14435 633 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RNF19BQ6ZMZ0 732 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF467Q7Z7K2 595 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LRRTM3Q86VH5 581 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZCCHC7Q8N3Z6 543 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PQLC3Q8N755 202 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PPHLN1Q8NEY8 458 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DCUN1D1Q96GG9 259 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MARK4Q96L34 752 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HNRNPABQ99729 332 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF670Q9BS34 389 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 OCEL1Q9H607 264 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SRRDQ9UH36 339 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FADS3Q9Y5Q0 445 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 F5H5T6 163 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ARHGEF9O43307 516 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GM2AP17900 193 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 IL10P22301 178 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CLCN2P51788 898 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 UBAP2LQ14157 1087 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FAM187BQ17R55 369 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZRANB3Q5FWF4 1079 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 INTS6LQ5JSJ4 861 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GATA6Q92908 595 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 UNC93B1Q9H1C4 597 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 IL1RL2Q9HB29 575 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CNTN3Q9P232 1028 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RUVBL2Q9Y230 463 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FAM50BQ9Y247 325 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TTC3P53804 2025 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NUP205Q92621 2012 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 H3BSA7 217 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PDLIM1O00151 329 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms