RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 QSER1Q2KHR3 1735 aa2.34□□□□□ -2.04
HMGB1-208ENST00000490788 COL6A3P12111 3177 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ARHGEF5Q12774 1597 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 C17orf102A2RUQ5 167 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 NPIPB13A6NJU9 1138 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 OR6C75A6NL08 312 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 NPIPB5A8MRT5 1133 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 NPIPB4C9JG80 1138 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 MS4A18H0YCH9 400 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 STMND1H3BQB6 276 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 EYA2O00167 538 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 IPO5O00410 1097 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 VWA5AO00534 786 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 RNMTO43148 476 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 TCEA3O75764 348 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 METTL18O95568 372 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 MMP3P08254 477 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 MYZAPP0CAP1 466 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 CBSLP0DN79 551 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ENO3P13929 434 aaPredicted RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ARSBP15848 533 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 RXRAP19793 462 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 TNFRSF1BP20333 461 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 PRKCHP24723 683 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 YWHAQP27348 245 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 CCKARP32238 428 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 TNFSF8P32971 234 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 CBSP35520 551 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 AVPR1AP37288 418 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 RFX2P48378 723 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 MMP14P50281 582 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 RASSF2P50749 326 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 PNLIPRP1P54315 467 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 PRKAA2P54646 552 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ACTR2P61160 394 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 CUL4BQ13620 913 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 THOC5Q13769 683 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 DCTN1Q14203 1278 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 SMAD1Q15797 465 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 FSCBQ5H9T9 825 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 DNTTIP2Q5QJE6 756 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 DCAF12L2Q5VW00 463 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ANO1Q5XXA6 986 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 NCAPH2Q6IBW4 605 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 HEPHL1Q6MZM0 1159 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 KIAA1161Q6NSJ0 714 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 TOM1L2Q6ZVM7 507 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 KRTAP5-2Q701N4 177 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 RNF144BQ7Z419 303 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 BRSK2Q8IWQ3 736 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 FAM9BQ8IZU0 186 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 CADM3Q8N126 398 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 GHDCQ8N2G8 530 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 HORMAD2Q8N7B1 307 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 GPATCH11Q8N954 259 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 EXD3Q8N9H8 876 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 IGFBPL1Q8WX77 278 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ZNF622Q969S3 477 aaKnown RBP eCLIP2.33□□□□□ -2.043e-10■■■■■ 39.1
HMGB1-208ENST00000490788 SDCCAG3Q96C92 435 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 MSI2Q96DH6 328 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 MARK4Q96L34 752 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 TEFMQ96QE5 360 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 FRG2BQ96QU4 278 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 GFM1Q96RP9 751 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 MAP6D1Q9H9H5 199 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 NOD2Q9HC29 1040 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 Q9N2J8 555 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 G6PC2Q9NQR9 355 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 TMEM248Q9NWD8 314 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 SAGE1Q9NXZ1 904 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 DERAQ9Y315 318 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 SRPRBQ9Y5M8 271 aaKnown RBP2.33□□□□□ -2.04
HMGB1-208ENST00000490788 INSL5Q9Y5Q6 135 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ACEP12821 1306 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 CCNB3Q8WWL7 1395 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 ANKRD30BQ9BXX2 1392 aa2.33□□□□□ -2.04
HMGB1-208ENST00000490788 EIF2AK4Q9P2K8 1649 aaKnown RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 KIF1AQ12756 1690 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 SPTLC2O15270 562 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ASAP2O43150 1006 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 KCNAB3O43448 404 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 LIASO43766 372 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 NBNO60934 754 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 DDNO94850 711 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 PRSS2P07478 247 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 LYL1P12980 280 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ACP5P13686 325 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 CHRNB2P17787 502 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ITGB8P26012 769 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 HOXD3P31249 432 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ADD2P35612 726 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 THBS3P49746 956 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 CDH12P55289 794 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ZP1P60852 638 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ARHGAP8P85298 464 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 ZBTB16Q05516 673 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 DSC1Q08554 894 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 TRAF2Q12933 501 aa2.32□□□□□ -2.04
HMGB1-208ENST00000490788 BYSLQ13895 437 aaKnown RBP2.32□□□□□ -2.04
HMGB1-208ENST00000490788 POSTNQ15063 836 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms