RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ZNF542PQ5EBM4 170 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 PPP6R3Q5H9R7 873 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 FIGNQ5HY92 759 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 HES3Q5TGS1 186 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 KYAT3Q6YP21 454 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 TRIM11Q96F44 468 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 LRRC19Q9H756 370 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 UCKL1Q9NWZ5 548 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 DNAJC28Q9NX36 388 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 DONSONQ9NYP3 566 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 HS3ST3A1Q9Y663 406 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 URB1O60287 2271 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 ARHGAP42A6NI28 874 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 GOLGA6L19H0YKK7 550 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 FPGTO14772 594 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 FFAR2O15552 330 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 SIGLEC6O43699 453 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 LRCH4O75427 683 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 PIGNO95427 931 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 DGKAP23743 735 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 PAPOLAP51003 745 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 NDST2P52849 883 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 HS1BP3Q53T59 392 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 KDM7AQ6ZMT4 941 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 RFX8Q6ZV50 586 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 CYP4V2Q6ZWL3 525 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 TTC7BQ86TV6 843 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 ZSCAN30Q86W11 494 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 SLC25A45Q8N413 288 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 FAM174AQ8TBP5 190 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 FNIP1Q8TF40 1166 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 NXPE2Q96DL1 559 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 ARHGEF26Q96DR7 871 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 SLC39A8Q9C0K1 460 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 PDFQ9HBH1 243 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 MRPL47Q9HD33 250 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 ASXL3Q9C0F0 2248 aa15.91■□□□□ 0.14
CCDC88B-205ENST00000472524 EIF3CLB5ME19 914 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 DFFAO00273 331 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 TRIM38O00635 465 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 PRAMEF11O60813 436 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 MMP20O60882 483 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 PIAS2O75928 621 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 C1SP09871 688 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 MYBL1P10243 752 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 ERCC2P18074 760 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 ITIH2P19823 946 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 XPAP23025 273 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 ITPKBP27987 946 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 HNF1BP35680 557 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 PBX1P40424 430 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 RABIFP47224 123 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 SEMG2Q02383 582 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 HGSNATQ68CP4 663 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 DCP2Q8IU60 420 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 CXorf40AQ8TE69 158 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 CPLX3Q8WVH0 158 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 LENG8Q96PV6 779 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 KLF6Q99612 283 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 EIF3CQ99613 913 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 WRAP53Q9BUR4 548 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 C1QTNF2Q9BXJ5 285 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 ISCUQ9H1K1 167 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 SP110Q9HB58 689 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 IPO11Q9UI26 975 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 MFHAS1Q9Y4C4 1052 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 RP1P56715 2156 aa15.9■□□□□ 0.14
CCDC88B-205ENST00000472524 A0A1W2PQJ5 194 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 AREL1O15033 823 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 TLX3O43711 291 aaPredicted RBP15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 CDK4P11802 303 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 TIMP2P16035 220 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 CKMT2P17540 419 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 DAB2P98082 770 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 PDE1CQ14123 709 aaPredicted RBP15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 FZD2Q14332 565 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 SMTNL2Q2TAL5 461 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 PROX2Q3B8N5 592 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 VPS36Q86VN1 386 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 ARHGAP12Q8IWW6 846 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 NPWQ8N729 165 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 DENND6BQ8NEG7 585 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 OR4C6Q8NH72 309 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 GPR27Q9NS67 375 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 AK5Q9Y6K8 562 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 LRP4O75096 1905 aa15.89■□□□□ 0.13
CCDC88B-205ENST00000472524 PALMO75781 387 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 TM7SF2O76062 418 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 SERPING1P05155 500 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 TCF4P15884 667 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 IL1R2P27930 398 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 IGFALSP35858 605 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 ABCG1P45844 678 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 RGRP47804 291 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 HNRNPKP61978 463 aaKnown RBP eCLIP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 ZNF211Q13398 564 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 TPRG1LQ5T0D9 272 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 CFAP58Q5T655 872 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 ARHGAP36Q6ZRI8 547 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms