RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 LRRC73Q5JTD7 316 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 RFX8Q6ZV50 586 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 PARGQ86W56 976 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 DENND6BQ8NEG7 585 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 OR4C6Q8NH72 309 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 ASB12Q8WXK4 309 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 CELF6Q96J87 481 aaKnown RBP13.05□□□□□ -0.32
CHD3-206ENST00000452447 EXOC2Q96KP1 924 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.05□□□□□ -0.32
CHD3-206ENST00000452447 SNRNP25Q9BV90 132 aaKnown RBP13.05□□□□□ -0.32
CHD3-206ENST00000452447 C1QTNF7Q9BXJ2 289 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 CPEB1Q9BZB8 566 aaKnown RBP13.05□□□□□ -0.32
CHD3-206ENST00000452447 LRRC19Q9H756 370 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 UCKL1Q9NWZ5 548 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 MYO1AQ9UBC5 1043 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 DKK3Q9UBP4 350 aa13.05□□□□□ -0.32
CHD3-206ENST00000452447 SPTY2D1-AS1A0A0U1RR47 76 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 AREL1O15033 823 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 TM7SF2O76062 418 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 ACP1P24666 158 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 PAPOLAP51003 745 aaKnown RBP13.04□□□□□ -0.32
CHD3-206ENST00000452447 SUOXP51687 545 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 THOP1P52888 689 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 UBASH3AP57075 661 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 FANCCQ00597 558 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 CAMK2BQ13554 666 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 CYTH1Q15438 398 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 PROX2Q3B8N5 592 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 CFAP58Q5T655 872 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 LUZP1Q86V48 1076 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 VPS36Q86VN1 386 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 PSTKQ8IV42 348 aaKnown RBP13.04□□□□□ -0.32
CHD3-206ENST00000452447 ARFGAP1Q8N6T3 406 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 CXorf40AQ8TE69 158 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 VOPP1Q96AW1 172 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 PEBP4Q96S96 227 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 KLF6Q99612 283 aaPredicted RBP13.04□□□□□ -0.32
CHD3-206ENST00000452447 TRIM7Q9C029 511 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 SLC39A8Q9C0K1 460 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 CBX8Q9HC52 389 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 LHX3Q9UBR4 397 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 BZW2Q9Y6E2 419 aaKnown RBP13.04□□□□□ -0.32
CHD3-206ENST00000452447 LRRK1Q38SD2 2015 aa13.04□□□□□ -0.32
CHD3-206ENST00000452447 J3KR12 359 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 INSIG1O15503 277 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 SPINT1O43278 529 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 PRAMEF11O60813 436 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 MMP20O60882 483 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 LRCH4O75427 683 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 PALMO75781 387 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 CSF2P04141 144 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 NME1P15531 152 aaKnown RBP13.03□□□□□ -0.32
CHD3-206ENST00000452447 TIMP2P16035 220 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ERCC2P18074 760 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ZNF135P52742 658 aaPredicted RBP13.03□□□□□ -0.32
CHD3-206ENST00000452447 CLDN6P56747 220 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 CYP4F3Q08477 520 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ELP6Q0PNE2 266 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 PTK2BQ14289 1009 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 FZD2Q14332 565 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 HES3Q5TGS1 186 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 KCTD15Q96SI1 283 aaPredicted RBP13.03□□□□□ -0.32
CHD3-206ENST00000452447 WRAP53Q9BUR4 548 aaKnown RBP13.03□□□□□ -0.32
CHD3-206ENST00000452447 DUSP23Q9BVJ7 150 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ISCUQ9H1K1 167 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 SUV39H2Q9H5I1 410 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ZWILCHQ9H900 591 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 SP110Q9HB58 689 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 PDFQ9HBH1 243 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 GPR27Q9NS67 375 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 EVA1BQ9NVM1 165 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 NLGN3Q9NZ94 848 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 DKK4Q9UBT3 224 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 RP1P56715 2156 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 A0A1W2PQJ5 194 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 DFFAO00273 331 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 SCAMP1O15126 338 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 PIGNO95427 931 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 E2F1Q01094 437 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ACAP1Q15027 740 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ERAP2Q6P179 960 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 PAF1Q8N7H5 531 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 HCAR2Q8TDS4 363 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 CENPTQ96BT3 561 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 IQCDQ96DY2 449 aa13.03□□□□□ -0.32
CHD3-206ENST00000452447 ZNF641Q96N77 438 aaPredicted RBP13.03□□□□□ -0.32
CHD3-206ENST00000452447 CINPQ9BW66 212 aaPredicted RBP13.03□□□□□ -0.32
CHD3-206ENST00000452447 NBEAQ8NFP9 2946 aa13.02□□□□□ -0.32
CHD3-206ENST00000452447 SHROOM3Q8TF72 1996 aa13.02□□□□□ -0.32
CHD3-206ENST00000452447 ADAMTS20P59510 1910 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 NEBLO76041 1014 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 CKMT1AP12532 417 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 JUNDP17535 347 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 ITIH2P19823 946 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 PCK1P35558 622 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 ARL4AP40617 200 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 HCAR3P49019 387 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 PFN3P60673 137 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 YPEL5P62699 121 aa13.02□□□□□ -0.33
CHD3-206ENST00000452447 TARDBPQ13148 414 aaKnown RBP eCLIP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms