RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 MYBL1P10243 752 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 CDK4P11802 303 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 CKMT2P17540 419 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 RAD51Q06609 339 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 ZNF211Q13398 564 aaPredicted RBP12.63□□□□□ -0.39
CPSF4-208ENST00000452047 FZD2Q14332 565 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 KDM7AQ6ZMT4 941 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 TMPRSS12Q86WS5 348 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 DCP2Q8IU60 420 aaKnown RBP12.63□□□□□ -0.39
CPSF4-208ENST00000452047 ARHGAP12Q8IWW6 846 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 NPWQ8N729 165 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 OR4C6Q8NH72 309 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 MDM1Q8TC05 714 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 SYN2Q92777 582 aaPredicted RBP12.63□□□□□ -0.39
CPSF4-208ENST00000452047 TRIM11Q96F44 468 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 SLC39A8Q9C0K1 460 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 CCDC86Q9H6F5 360 aaKnown RBP12.63□□□□□ -0.39
CPSF4-208ENST00000452047 DKK4Q9UBT3 224 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 KNTC1P50748 2209 aa12.63□□□□□ -0.39
CPSF4-208ENST00000452047 TSPAN11A1L157 253 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 NEMP1O14524 444 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 SIGLEC6O43699 453 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 PIGNO95427 931 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 TCF4P15884 667 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 TIMP2P16035 220 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 ERCC2P18074 760 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 ITIH2P19823 946 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 ACP1P24666 158 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 IL1R2P27930 398 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 PCK1P35558 622 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 RABIFP47224 123 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 RGRP47804 291 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 PAPOLAP51003 745 aaKnown RBP12.62□□□□□ -0.39
CPSF4-208ENST00000452047 CLDN6P56747 220 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 PFN3P60673 137 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 SGCGQ13326 291 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 ILKQ13418 452 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 DPYSQ14117 519 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 TDRD12Q587J7 1177 aaKnown RBP12.62□□□□□ -0.39
CPSF4-208ENST00000452047 PPP6R3Q5H9R7 873 aaPredicted RBP12.62□□□□□ -0.39
CPSF4-208ENST00000452047 TPRG1LQ5T0D9 272 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 TTC7BQ86TV6 843 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 CENPTQ96BT3 561 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 MRPL47Q9HD33 250 aaKnown RBP12.62□□□□□ -0.39
CPSF4-208ENST00000452047 CWC15Q9P013 229 aaKnown RBP12.62□□□□□ -0.39
CPSF4-208ENST00000452047 MYO1AQ9UBC5 1043 aa12.62□□□□□ -0.39
CPSF4-208ENST00000452047 LRP4O75096 1905 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 TRABD2BA6NFA1 517 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 ARHGAP42A6NI28 874 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 FPGTO14772 594 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 FFAR2O15552 330 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 CSF2P04141 144 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 NME1P15531 152 aaKnown RBP12.61□□□□□ -0.39
CPSF4-208ENST00000452047 IGFALSP35858 605 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 HCAR3P49019 387 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 ZNF135P52742 658 aaPredicted RBP12.61□□□□□ -0.39
CPSF4-208ENST00000452047 UBASH3AP57075 661 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 HNRNPKP61978 463 aaKnown RBP eCLIP12.61□□□□□ -0.393e-6■■■■□ 21
CPSF4-208ENST00000452047 TPM4P67936 248 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 GRM3Q14832 879 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 ACAP1Q15027 740 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 DPYSL2Q16555 572 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 ZNF542PQ5EBM4 170 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 HES3Q5TGS1 186 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 ARHGAP36Q6ZRI8 547 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 PARGQ86W56 976 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 HCAR2Q8TDS4 363 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 RFFLQ8WZ73 363 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 NCAPGQ9BPX3 1015 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 DNAJC28Q9NX36 388 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 KLF15Q9UIH9 416 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 CAPN11Q9UMQ6 739 aa12.61□□□□□ -0.39
CPSF4-208ENST00000452047 BZW2Q9Y6E2 419 aaKnown RBP12.61□□□□□ -0.39
CPSF4-208ENST00000452047 SMG1Q96Q15 3661 aaKnown RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 A0A087X0T9 212 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 LY6G6EA0A0G2JKS1 128 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 SCAMP1O15126 338 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 DAPK3O43293 454 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 BUB1BO60566 1050 aaPredicted RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 MMP20O60882 483 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 TM7SF2O76062 418 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 GYPCP04921 128 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 SERPING1P05155 500 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 FAM228BP0C875 321 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 HNF1BP35680 557 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 CSNK1DP48730 415 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 SUOXP51687 545 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 ZBED6P86452 979 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 PDE1CQ14123 709 aaPredicted RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 UGP2Q16851 508 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 SMTNL2Q2TAL5 461 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 TMEM52BQ4KMG9 183 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 TXNRD3NBQ6F5E7 133 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 ZSWIM9Q86XI8 627 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 TP53INP2Q8IXH6 220 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 PDCD7Q8N8D1 485 aaKnown RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 NIPA2Q8N8Q9 360 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 TP53I13Q8NBR0 393 aaPredicted RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 TSEN2Q8NCE0 465 aaKnown RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 ZNF548Q8NEK5 533 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms