RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 MIA3Q5JRA6 1907 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 MROH6A6NGR9 719 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 SLC9A3R1O14745 358 aaPredicted RBP14.39□□□□□ -0.11
USP39-207ENST00000450066 RFPL1O75677 317 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 PAMP19021 973 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 RPA3P35244 121 aaPredicted RBP14.39□□□□□ -0.11
USP39-207ENST00000450066 ARCN1P48444 511 aaKnown RBP14.39□□□□□ -0.11
USP39-207ENST00000450066 LAMB3Q13751 1172 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 BMPR2Q13873 1038 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 SEPT6Q14141 434 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 COL13A1Q5TAT6 717 aaPredicted RBP14.39□□□□□ -0.11
USP39-207ENST00000450066 GRTP1Q5TC63 336 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 MROH9Q5TGP6 573 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 ESRP1Q6NXG1 681 aaKnown RBP14.39□□□□□ -0.11
USP39-207ENST00000450066 NLRP9Q7RTR0 991 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 ZNF557Q8N988 423 aaPredicted RBP14.39□□□□□ -0.11
USP39-207ENST00000450066 PPP2R3CQ969Q6 453 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 MRPL38Q96DV4 380 aaKnown RBP14.39□□□□□ -0.11
USP39-207ENST00000450066 NSMCE3Q96MG7 304 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 AGAP2Q99490 1192 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 LINC00597Q9H2U6 94 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 ABCB8Q9NUT2 735 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 NSMCE4AQ9NXX6 385 aa14.39□□□□□ -0.11
USP39-207ENST00000450066 CCDC78A2IDD5 438 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 GMNCA6NCL1 334 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 GOLGA8RI6L899 631 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 ZWINTO95229 277 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 MT-CO1P00395 513 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 PYGBP11216 843 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 ALADP13716 330 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 RHOAP61586 193 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 SLC20A2Q08357 652 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 LRRC14Q15048 493 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 CNGA3Q16281 694 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 KIAA0930Q6ICG6 404 aaPredicted RBP14.38□□□□□ -0.11
USP39-207ENST00000450066 ADGRG2Q8IZP9 1017 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 DYDC1Q8WWB3 177 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 KLF6Q99612 283 aaPredicted RBP14.38□□□□□ -0.11
USP39-207ENST00000450066 BBS2Q9BXC9 721 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 TDRD1Q9BXT4 1180 aaKnown RBP14.38□□□□□ -0.11
USP39-207ENST00000450066 INTS6Q9UL03 887 aaKnown RBP14.38□□□□□ -0.11
USP39-207ENST00000450066 FCF1Q9Y324 198 aaKnown RBP14.38□□□□□ -0.11
USP39-207ENST00000450066 NEDD8-MDP1E9PL57 170 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 VAPBO95292 243 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 ITGA2BP08514 1039 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 HLA-FP30511 346 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 TSTD2Q5T7W7 516 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 NCEH1Q6PIU2 408 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 STRA8Q7Z7C7 330 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 RNF135Q8IUD6 432 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 CNTN4Q8IWV2 1026 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 PEX13Q92968 403 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 APOPT1Q96IL0 206 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 RBBP8Q99708 897 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 IARS2Q9NSE4 1012 aaKnown RBP14.38□□□□□ -0.11
USP39-207ENST00000450066 MARK1Q9P0L2 795 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 SLC2A6Q9UGQ3 507 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 REV3LO60673 3130 aa14.38□□□□□ -0.11
USP39-207ENST00000450066 TM9SF1O15321 606 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 ASMTLO95671 621 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 TYRP14679 529 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 ARNTP27540 789 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 SPRP35270 261 aaPredicted RBP14.37□□□□□ -0.11
USP39-207ENST00000450066 SEC24CP53992 1094 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 CSE1LP55060 971 aaKnown RBP14.37□□□□□ -0.11
USP39-207ENST00000450066 WDR4P57081 412 aaKnown RBP14.37□□□□□ -0.11
USP39-207ENST00000450066 GALNT3Q14435 633 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 SMAD1Q15797 465 aaKnown RBP14.37□□□□□ -0.11
USP39-207ENST00000450066 PITRM1Q5JRX3 1037 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 TMEM184AQ6ZMB5 413 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 BRSK1Q8TDC3 778 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 BCAS4Q8TDM0 211 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 MCMBPQ9BTE3 642 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 MLXIPLQ9NP71 852 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 CHKBQ9Y259 395 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 RAI2Q9Y5P3 530 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 WNT6Q9Y6F9 365 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 MYLKQ15746 1914 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 K7ERQ8 282 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 LDB2O43679 373 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 SIN3BO75182 1162 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 PRLP01236 227 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 CCNFP41002 786 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 LIMK2P53671 638 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 AP1S1P61966 158 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 IL9RQ01113 521 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 LY6G5CQ5SRR4 150 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 SRLQ86TD4 932 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 NPAS3Q8IXF0 933 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 OR13J1Q8NGT2 312 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 TCP10LQ8TDR4 215 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 ACMSDQ8TDX5 336 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 CKAP2Q8WWK9 683 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 ADGRE3Q9BY15 652 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 IGFLR1Q9H665 355 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 MKS1Q9NXB0 559 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 PCDHGC4Q9Y5F7 938 aa14.37□□□□□ -0.11
USP39-207ENST00000450066 GOLGA8TH3BQL2 631 aa14.36□□□□□ -0.11
USP39-207ENST00000450066 RFXAPO00287 272 aa14.36□□□□□ -0.11
USP39-207ENST00000450066 SMAD6O43541 496 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms