RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PSD2Q9BQI7 771 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 SLC25A23Q9BV35 468 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 B3GNT5Q9BYG0 378 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 OSBPL2Q9H1P3 480 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 GPN2Q9H9Y4 310 aaPredicted RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 ZFYVE28Q9HCC9 887 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 SEPT3Q9UH03 358 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 AURKCQ9UQB9 309 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 SSC5DA1L4H1 1573 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 IGKV6D-21A0A0A0MT36 114 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 RNF103-CHMP3A0A140T963 221 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 UBDO15205 165 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 MAFO75444 373 aaPredicted RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 JUNBP17275 347 aaPredicted RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 C1QTNF8P60827 252 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 PPP1R3AQ16821 1122 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 BTLAQ7Z6A9 289 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 ZC3HC1Q86WB0 502 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 CDR2LQ86X02 465 aaPredicted RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 CADM3Q8N126 398 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 SNX31Q8N9S9 440 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 PNPT1Q8TCS8 783 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 AFG1LQ8WV93 481 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 CENPNQ96H22 339 aaPredicted RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 TSNARE1Q96NA8 513 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 CSF3RQ99062 836 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 PCYT2Q99447 389 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 YTHDF1Q9BYJ9 559 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 MEAF6Q9HAF1 191 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 LRRC4Q9HBW1 653 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 IARS2Q9NSE4 1012 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 FAM49BQ9NUQ9 324 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 SEPT10Q9P0V9 454 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 PSME2Q9UL46 239 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 RAD54BQ9Y620 910 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 VWA5AO00534 786 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 EI24O14681 340 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 AP2A1O95782 977 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 FASP25445 335 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 IFRD2Q12894 506 aaPredicted RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 SLC12A1Q13621 1099 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 EEF1DP3Q658K8 133 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 NEPROQ6NW34 567 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 ERO1BQ86YB8 467 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 TXNDC5Q8NBS9 432 aaKnown RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 OR9I1Q8NGQ6 314 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 USP33Q8TEY7 942 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 RAB2BQ8WUD1 216 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 SNX19Q92543 992 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 CCDC138Q96M89 665 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 ZNF347Q96SE7 839 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 CGREF1Q99674 301 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 CASS4Q9NQ75 786 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 C8orf4Q9NR00 106 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 BFARQ9NZS9 450 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 IFT80Q9P2H3 777 aaPredicted RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 DAPK2Q9UIK4 370 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 CTDP1Q9Y5B0 961 aaPredicted RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 NME4O00746 187 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 TPST1O60507 370 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 MBL2P11226 248 aaPredicted RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 SAT1P21673 171 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 NFKBIAP25963 317 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 OXTRP30559 389 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 AVPR1AP37288 418 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 OPRL1P41146 370 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 ATP6V0D1P61421 351 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 USP10Q14694 798 aaKnown RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 PHKG1Q16816 387 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 CCNYL2Q5T2Q4 361 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 TMTC4Q5T4D3 741 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 PPP1R26Q5T8A7 1209 aaPredicted RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 ZNF773Q6PK81 442 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 PIWIL4Q7Z3Z4 852 aaKnown RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 DHRSXQ8N5I4 330 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 RNF149Q8NC42 400 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 ERLEC1Q96DZ1 483 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 MYRFLQ96LU7 910 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 GLT1D1Q96MS3 346 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 OMDQ99983 421 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 RHOJQ9H4E5 214 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 TNFRSF12AQ9NP84 129 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 SMPD3Q9NY59 655 aaPredicted RBP10.79□□□□□ -0.68
USP54-204ENST00000422491 GTSE1Q9NYZ3 720 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 GPRC5DQ9NZD1 345 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 ABCD2Q9UBJ2 740 aa10.79□□□□□ -0.68
USP54-204ENST00000422491 YDJCA8MPS7 323 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 B4GALT5O43286 388 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 JRKO75564 520 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 KCNH1O95259 989 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 HNRNPLP14866 589 aaKnown RBP eCLIP10.78□□□□□ -0.68
USP54-204ENST00000422491 DNAJB1P25685 340 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 ATICP31939 592 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 LAMTOR4Q0VGL1 99 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 CERCAMQ5T4B2 595 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 ATF7IP2Q5U623 682 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 GTF2IRD2BQ6EKJ0 949 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 XAF1Q6GPH4 301 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 JADE1Q6IE81 842 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 LCN8Q6JVE9 175 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms