RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 NT5C3BQ969T7 300 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 PDLIM2Q96JY6 352 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 CFAP57Q96MR6 1250 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 SLC46A1Q96NT5 459 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 DNAJC7Q99615 494 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 LRRC61Q9BV99 259 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 C1QTNF2Q9BXJ5 285 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 TRIM4Q9C037 500 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 CLPBQ9H078 707 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 SYNCQ9H7C4 482 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 ATP13A1Q9HD20 1204 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.11□□□□□ -0.31
LINC00339-202ENST00000416769 SSUH2Q9Y2M2 353 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 FARP1Q9Y4F1 1045 aaPredicted RBP13.11□□□□□ -0.31
LINC00339-202ENST00000416769 BZW2Q9Y6E2 419 aaKnown RBP13.11□□□□□ -0.31
LINC00339-202ENST00000416769 PTPN13Q12923 2485 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 EME2A4GXA9 379 aaPredicted RBP13.1□□□□□ -0.31
LINC00339-202ENST00000416769 CDRT15L2A8MXV6 281 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 GOLGA8SH3BPF8 625 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 LZTS3O60299 673 aaPredicted RBP13.1□□□□□ -0.31
LINC00339-202ENST00000416769 GJB6O95452 261 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 HGFP14210 728 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 PRKCIP41743 596 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 CLCN6P51797 869 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 PFN3P60673 137 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 RPS21P63220 83 aaKnown RBP13.1□□□□□ -0.31
LINC00339-202ENST00000416769 NFKB2Q00653 900 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 TGIF1Q15583 401 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 ASIC2Q16515 512 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 CARD16Q5EG05 197 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 ATXN7L2Q5T6C5 722 aaPredicted RBP13.1□□□□□ -0.31
LINC00339-202ENST00000416769 FAM102AQ5T9C2 384 aaPredicted RBP13.1□□□□□ -0.31
LINC00339-202ENST00000416769 KIAA1161Q6NSJ0 714 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 VPS36Q86VN1 386 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 ZNF677Q86XU0 584 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 XYLT1Q86Y38 959 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 SFTPA2Q8IWL1 248 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 EMC1Q8N766 993 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 TC2NQ8N9U0 490 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 CCDC114Q96M63 670 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 PPP1R9BQ96SB3 815 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 HEPHQ9BQS7 1158 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 MBNL1Q9NR56 388 aaKnown RBP13.1□□□□□ -0.31
LINC00339-202ENST00000416769 THSD1Q9NS62 852 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 ABHD10Q9NUJ1 306 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 WDR70Q9NW82 654 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 NEU3Q9UQ49 428 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 HS3ST3A1Q9Y663 406 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 UNC13CQ8NB66 2214 aa13.1□□□□□ -0.31
LINC00339-202ENST00000416769 LRP4O75096 1905 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 BOD1L1Q8NFC6 3051 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 TLN1Q9Y490 2541 aaKnown RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 NEMP2A6NFY4 417 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 C16orf96A6NNT2 1141 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 FAM72CH0Y354 149 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 K7ENP7 123 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 TNFSF15O95150 251 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 SERPING1P05155 500 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 UGT2B4P06133 528 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 C6P13671 934 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 CYP11B1P15538 503 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 RECQLP46063 649 aaPredicted RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 GSDMDP57764 484 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 GNA12Q03113 381 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 NR0B2Q15466 257 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 PRRT3Q5FWE3 981 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 BRMS1LQ5PSV4 323 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 FAM72AQ5TYM5 149 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 FAM72DQ6L9T8 149 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 INO80CQ6PI98 192 aaPredicted RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 RBM44Q6ZP01 1051 aaKnown RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 BNIPLQ7Z465 357 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 FAM72BQ86X60 149 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 PHACTR4Q8IZ21 702 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 LSMEM2Q8N112 164 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 RYBPQ8N488 228 aaPredicted RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 EXD3Q8N9H8 876 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 FUBP1Q96AE4 644 aaKnown RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 IFT43Q96FT9 208 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 PPP1R16AQ96I34 528 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 PANX2Q96RD6 677 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 DUSP23Q9BVJ7 150 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 BOCQ9BWV1 1114 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 FOXP3Q9BZS1 431 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 ZNHIT6Q9NWK9 470 aaKnown RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 SIRPGQ9P1W8 387 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 APOBEC3BQ9UH17 382 aaKnown RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 IPO11Q9UI26 975 aaKnown RBP13.09□□□□□ -0.31
LINC00339-202ENST00000416769 SCN8AQ9UQD0 1980 aa13.09□□□□□ -0.31
LINC00339-202ENST00000416769 ILVBLA1L0T0 632 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 B8ZZF3 427 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 KRIT1O00522 736 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 FPGTO14772 594 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 SLC28A2O43868 658 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 MMP20O60882 483 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 TSHRP16473 764 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 RBMS1P29558 406 aaKnown RBP13.08□□□□□ -0.32
LINC00339-202ENST00000416769 RABIFP47224 123 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 DUSP3P51452 185 aaPredicted RBP13.08□□□□□ -0.32
LINC00339-202ENST00000416769 ATP11AP98196 1134 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms