RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TSGA13Q96PP4 275 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 NELL2Q99435 816 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 LGMNQ99538 433 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ACSS3Q9H6R3 686 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 SSU72Q9NP77 194 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 TBK1Q9UHD2 729 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 SMG5Q9UPR3 1016 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ERVW-1Q9UQF0 538 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 MTF2Q9Y483 593 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 COL4A2P08572 1712 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 TCRBV7S3A2A0A539 114 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 FAM47DPA6NHR8 397 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 FAM170BA6NMN3 283 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 STK25O00506 426 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 PRAMEF11O60813 436 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 MT-CO1P00395 513 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 ASLP04424 464 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 ALADP13716 330 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 CREB1P16220 341 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 CCNCP24863 283 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 RBL1P28749 1068 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 ARF5P84085 180 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 IL10RBQ08334 325 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 SLC20A2Q08357 652 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 SIGLEC14Q08ET2 396 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 MSS51Q4VC12 460 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 PALM2Q8IXS6 379 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 LRRC34Q8IZ02 419 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 ANKS4BQ8N8V4 417 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 MCUQ8NE86 351 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 RPL10LQ96L21 214 aaKnown RBP13.6□□□□□ -0.23
LIMS1-204ENST00000409441 MAGEB18Q96M61 343 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 QKIQ96PU8 341 aaKnown RBP eCLIP13.6□□□□□ -0.234e-8■■■■■ 31.8
LIMS1-204ENST00000409441 DHRS4Q9BTZ2 278 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 BRD8Q9H0E9 1235 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 SP110Q9HB58 689 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 SAMD15Q9P1V8 674 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 SLCO3A1Q9UIG8 710 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 HCN2Q9UL51 889 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 ACTL7AQ9Y615 435 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 NUP205Q92621 2012 aa13.6□□□□□ -0.23
LIMS1-204ENST00000409441 COL4A3Q01955 1670 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 PPP1R12AO14974 1030 aaPredicted RBP13.59□□□□□ -0.23
LIMS1-204ENST00000409441 GCATO75600 419 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 CD160O95971 181 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 VIMP08670 466 aaKnown RBP13.59□□□□□ -0.23
LIMS1-204ENST00000409441 CHRNB1P11230 501 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 STX2P32856 288 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 KIR2DL1P43626 348 aaPredicted RBP13.59□□□□□ -0.23
LIMS1-204ENST00000409441 STK19P49842 368 aaPredicted RBP13.59□□□□□ -0.23
LIMS1-204ENST00000409441 SEC13P55735 322 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 PPARDQ03181 441 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 PPIDQ08752 370 aaKnown RBP13.59□□□□□ -0.23
LIMS1-204ENST00000409441 AP1B1Q10567 949 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 CCINQ13939 588 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 UBXN2BQ14CS0 331 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 PTPRNQ16849 979 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 BBS9Q3SYG4 887 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 C2orf27AQ580R0 203 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 ADGRD1Q6QNK2 874 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 TRIM67Q6ZTA4 783 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 C3orf62Q6ZUJ4 267 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 ZNF687Q8N1G0 1237 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 KCNV2Q8TDN2 545 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 TFB1MQ8WVM0 346 aaKnown RBP13.59□□□□□ -0.23
LIMS1-204ENST00000409441 HDAC11Q96DB2 347 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 LRRC39Q96DD0 335 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 MRGPRX3Q96LB0 322 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 FOXQ1Q9C009 403 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 TBC1D17Q9HA65 648 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 LMAN1LQ9HAT1 526 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 PDFQ9HBH1 243 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 LTB4R2Q9NPC1 389 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 RAB6BQ9NRW1 208 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 SLC25A13Q9UJS0 675 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 TEX264Q9Y6I9 313 aa13.59□□□□□ -0.23
LIMS1-204ENST00000409441 CXorf51AA0A1B0GTR3 108 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 K7ERQ8 282 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 MATN3O15232 486 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 SRPRAP08240 638 aaKnown RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 GSTA2P09210 222 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 KRT15P19012 456 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 TPSB2P20231 275 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 TARSP26639 723 aaKnown RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 TIE1P35590 1138 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 NNMTP40261 264 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 IL9RQ01113 521 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF33AQ06730 810 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 IFT88Q13099 833 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 FZD5Q13467 585 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 TPSAB1Q15661 275 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 FBXO43Q4G163 708 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 DGKKQ5KSL6 1271 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 HP1BP3Q5SSJ5 553 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 EGFLAMQ63HQ2 1017 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 TIGD7Q6NT04 549 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 CCDC121Q6ZUS5 278 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 ANKRD42Q8N9B4 389 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 MGARPQ8TDB4 240 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 SMC6Q96SB8 1091 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms