RNA–Protein interactions for RNA: ENST00000403495.2

HMGB1P17-201, Transcript of high mobility group box 1 pseudogene 17, humanhuman

BASIC

Gene HMGB1P17, Length 628 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P17-201ENST00000403495 F2RL1P55085 397 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 SNX16P57768 344 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 RPS13P62277 151 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 PSMC6P62333 389 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 DAZAP2Q15038 168 aaPredicted RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 CCNG2Q16589 344 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 GSTA3Q16772 222 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 RILPL1Q5EBL4 403 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 PIK3CD-AS1Q5SR53 167 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 PRAMEF19Q5SWL8 479 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 GKAP1Q5VSY0 366 aaPredicted RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 ISM2Q6H9L7 571 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 LCTLQ6UWM7 567 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 FAM83HQ6ZRV2 1179 aaPredicted RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 CCDC13Q8IYE1 715 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 GJC3Q8NFK1 279 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 CEP76Q8TAP6 659 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 MSI2Q96DH6 328 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 MMABQ96EY8 250 aaPredicted RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 SIN3AQ96ST3 1273 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 NUDT16L1Q9BRJ7 211 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 MRIQ9BWK5 157 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 B3GNT4Q9C0J1 378 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 WDR33Q9C0J8 1336 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 MVB12BQ9H7P6 319 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 FBRSL1Q9HCM7 1045 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 SMYD2Q9NRG4 433 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 HCFC1R1Q9NWW0 138 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 CNOT8Q9UFF9 292 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 AGO2Q9UKV8 859 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 FAM96BQ9Y3D0 163 aa4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 LSM4Q9Y4Z0 139 aaKnown RBP4.08□□□□□ -1.76
HMGB1P17-201ENST00000403495 TTBK1Q5TCY1 1321 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 RNMTO43148 476 aaKnown RBP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 PAGE4O60829 102 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 TFP02787 698 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 CLTBP09497 229 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 TFPIP10646 304 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 ALOX12P18054 663 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 SRD5A1P18405 259 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 PSMA4P25789 261 aaKnown RBP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 ACSL1P33121 698 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 RYKP34925 604 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 CLCN3P51790 818 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 CLNS1AP54105 237 aaKnown RBP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 ID2Q02363 134 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 NUCB1Q02818 461 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 CUL4AQ13619 759 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 LAMB3Q13751 1172 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 WTAPQ15007 396 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 ODF3L2Q3SX64 289 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 KLHL35Q6PF15 583 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 NCEH1Q6PIU2 408 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 CRELD2Q6UXH1 353 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 HAPLN4Q86UW8 402 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 TICAM2Q86XR7 235 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 SRBD1Q8N5C6 995 aaKnown RBP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 GPT2Q8TD30 523 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 BCAS4Q8TDM0 211 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 TMEM170AQ8WVE7 144 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 FAM120BQ96EK7 910 aaKnown RBP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 CLMNQ96JQ2 1002 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 CMTM3Q96MX0 182 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 MXRA8Q9BRK3 442 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 TUBB6Q9BUF5 446 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 NPFFR1Q9GZQ6 430 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 MAP6D1Q9H9H5 199 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 ANKEF1Q9NU02 776 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 EHD2Q9NZN4 543 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 NCKIPSDQ9NZQ3 722 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 ABI3Q9P2A4 366 aa4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.07□□□□□ -1.76
HMGB1P17-201ENST00000403495 FRMD3A2A2Y4 597 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 ZNF814B7Z6K7 855 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 STMND1H3BQB6 276 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 SEC14L5O43304 696 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 TIMM44O43615 452 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 RGS11O94810 467 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 NKX2-2O95096 273 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 LCKP06239 509 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 AKR1B1P15121 316 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 ZNF8P17098 575 aaPredicted RBP4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 MCM3P25205 808 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 GCH1P30793 250 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 ARL1P40616 181 aaPredicted RBP4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 RAD52P43351 418 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 CENPAP49450 140 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 IRF3Q14653 427 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 DPCR1Q3MIW9 517 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 ESCO2Q56NI9 601 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 QSOX2Q6ZRP7 698 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 PTF1AQ7RTS3 328 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 PARP16Q8N5Y8 322 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 KDM1BQ8NB78 822 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 SCFD2Q8WU76 684 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 TMEM174Q8WUU8 243 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 ARHGEF2Q92974 986 aaKnown RBP4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 ERP27Q96DN0 273 aa4.06□□□□□ -1.76
HMGB1P17-201ENST00000403495 CALML4Q96GE6 196 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms