RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 C1QTNF2Q9BXJ5 285 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 TMEM121BQ9BXQ6 578 aaPredicted RBP18.61■□□□□ 0.57
CLN3-202ENST00000355477 APOBEC2Q9Y235 224 aaKnown RBP18.61■□□□□ 0.57
CLN3-202ENST00000355477 ZZEF1O43149 2961 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 POM121BA6NF01 834 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 GOLGA8CPA6NN73 597 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 C1QTNF9BB2RNN3 333 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 MYO1FO00160 1098 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 NEMP1O14524 444 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 BUB1BO60566 1050 aaPredicted RBP18.6■□□□□ 0.57
CLN3-202ENST00000355477 ITGAVP06756 1048 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 C1QTNF9P0C862 333 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 ARL4AP40617 200 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 ADKP55263 362 aaKnown RBP18.6■□□□□ 0.57
CLN3-202ENST00000355477 TRIM14Q14142 442 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 ZNF564Q8TBZ8 553 aaPredicted RBP18.6■□□□□ 0.57
CLN3-202ENST00000355477 TEKT4Q8WW24 435 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 TSC1Q92574 1164 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 CSPG4P5Q96PW8 444 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 CHP1Q99653 195 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 PCDH18Q9HCL0 1135 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 DKK3Q9UBP4 350 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 IPO11Q9UI26 975 aaKnown RBP18.6■□□□□ 0.57
CLN3-202ENST00000355477 NEUROG3Q9Y4Z2 214 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 HS3ST3A1Q9Y663 406 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 DMXL2Q8TDJ6 3036 aa18.6■□□□□ 0.57
CLN3-202ENST00000355477 FAM221BA6H8Z2 402 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 YKT6O15498 198 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 TNFSF14O43557 240 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 PALMO75781 387 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 DKK1O94907 266 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 IL4RP24394 825 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 IL10RBQ08334 325 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 SGCGQ13326 291 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 ATP13A4Q4VNC1 1196 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 KDM7AQ6ZMT4 941 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 Q6ZSR6 202 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 SLC22A18ASQ8N1D0 253 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 OXR1Q8N573 874 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 LZTR1Q8N653 840 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 EID2Q8N6I1 236 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 GATA6Q92908 595 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 NSMCE3Q96MG7 304 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 CALN1Q9BXU9 219 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 SUV39H2Q9H5I1 410 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 SP110Q9HB58 689 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 MSRB2Q9Y3D2 182 aa18.59■□□□□ 0.57
CLN3-202ENST00000355477 MUSKO15146 869 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 MMP20O60882 483 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 SDC3O75056 442 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 CD48P09326 243 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 SSR1P43307 286 aaKnown RBP18.58■□□□□ 0.56
CLN3-202ENST00000355477 MMRN1Q13201 1228 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 TMCO3Q6UWJ1 677 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 SRLQ86TD4 932 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 CAMK1DQ8IU85 385 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 LENG8Q96PV6 779 aaPredicted RBP18.58■□□□□ 0.56
CLN3-202ENST00000355477 ABHD10Q9NUJ1 306 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 KLHL11Q9NVR0 708 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 CTTNBP2NLQ9P2B4 639 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 FTSJ1Q9UET6 329 aa18.58■□□□□ 0.56
CLN3-202ENST00000355477 ANKRD11Q6UB99 2663 aaPredicted RBP18.57■□□□□ 0.56
CLN3-202ENST00000355477 MYLKQ15746 1914 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 SSU72P8A0A1W2PR75 194 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 TSPAN11A1L157 253 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 A6NNZ2 444 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 MFAP3LO75121 409 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 PROSCO94903 275 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 PEX11BO96011 259 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 H2AFZP0C0S5 128 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 CSNK1DP48730 415 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 ARSEP51690 589 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 CDH6P55285 790 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 SLC10A7Q0GE19 358 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 INAVAQ3KP66 663 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 UNQ6494/PRO21346Q6UXR6 183 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 H2AFVQ71UI9 128 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 PTAR1Q7Z6K3 402 aaPredicted RBP18.57■□□□□ 0.56
CLN3-202ENST00000355477 ZSWIM9Q86XI8 627 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 SLC25A45Q8N413 288 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 FAM71BQ8TC56 605 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 HCAR2Q8TDS4 363 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 ASB12Q8WXK4 309 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 CTNNBL1Q8WYA6 563 aaPredicted RBP18.57■□□□□ 0.56
CLN3-202ENST00000355477 CENPTQ96BT3 561 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 WRAP53Q9BUR4 548 aaKnown RBP18.57■□□□□ 0.56
CLN3-202ENST00000355477 CINPQ9BW66 212 aaPredicted RBP18.57■□□□□ 0.56
CLN3-202ENST00000355477 DEF6Q9H4E7 631 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 GPR27Q9NS67 375 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 ZNHIT6Q9NWK9 470 aaKnown RBP18.57■□□□□ 0.56
CLN3-202ENST00000355477 UVRAGQ9P2Y5 699 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 FREM2Q5SZK8 3169 aa18.57■□□□□ 0.56
CLN3-202ENST00000355477 TTC24A2A3L6 582 aaPredicted RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 MAFKO60675 156 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 LDOC1O95751 146 aaPredicted RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 TAS2R40P59535 323 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 SEMG2Q02383 582 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 NSUN2Q08J23 767 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLN3-202ENST00000355477 TBX2Q13207 712 aaPredicted RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 KRT81Q14533 505 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms