RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CTTNQ14247 550 aaKnown RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZNF169Q14929 603 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 QPRTQ15274 297 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SPANXN2Q5MJ10 180 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RTP2Q5QGT7 225 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 BICRALQ6AI39 1079 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RFX8Q6ZV50 586 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZC3H7AQ8IWR0 971 aaKnown RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SMYD4Q8IYR2 804 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 TCTE3Q8IZS6 198 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 WDR36Q8NI36 951 aaKnown RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 UPF1Q92900 1129 aaKnown RBP eCLIP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RFKQ969G6 155 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 C12orf57Q99622 126 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 DNAJC5Q9H3Z4 198 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 DSN1Q9H410 356 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 LRRC40Q9H9A6 602 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 LY9Q9HBG7 655 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 PPP4R1LQ9P1A2 415 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RIMS3Q9UJD0 308 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 TFR2Q9UP52 801 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 PTCH2Q9Y6C5 1203 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ABCC1P33527 1531 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ASNSP08243 561 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 NFICP08651 508 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ACADMP11310 421 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 AKR1B1P15121 316 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 LIMK1P53667 647 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 BPIFB3P59826 476 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RAC1P63000 192 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 C10orf62Q5T681 223 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 USP45Q70EL2 814 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ASPGQ86U10 573 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RASAL3Q86YV0 1011 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 UBQLNLQ8IYU4 475 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 C4orf33Q8N1A6 199 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 TMEM199Q8N511 208 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SLC25A41Q8N5S1 370 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZNF565Q8N9K5 539 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 TRPV3Q8NET8 790 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 DEDD2Q8WXF8 326 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 COL26A1Q96A83 441 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 FOPNLQ96NB1 174 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CSRNP1Q96S65 589 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 HTATIP2Q9BUP3 242 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 BRIP1Q9BX63 1249 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 KRT84Q9NSB2 600 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 PTPN22Q9Y2R2 807 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CYP2D7A0A087X1C5 515 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZNF99A8MXY4 864 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ABCD4O14678 606 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 PAPSS1O43252 624 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 BCAS1O75363 584 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 UGT2B17O75795 530 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RBP1P09455 135 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CYP7A1P22680 504 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CHMP24386 653 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CNTFP26441 200 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ARSDP51689 593 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 UGT2B15P54855 530 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 POU6F2P78424 691 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SLC25A3Q00325 362 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CHAF1BQ13112 559 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 IKZF1Q13422 519 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 MPP2Q14168 576 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SEC23AQ15436 765 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 COL28A1Q2UY09 1125 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 INAVAQ3KP66 663 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZMAT1Q5H9K5 638 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CLLU1Q5K131 121 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 JAZF1Q86VZ6 243 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SETD9Q8NE22 299 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZNF555Q8NEP9 628 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 HDAC2Q92769 488 aaKnown RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 TMIGD2Q96BF3 282 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 EAF2Q96CJ1 260 aaPredicted RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 C10orf90Q96M02 699 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SPATA9Q9BWV2 254 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 NUAK2Q9H093 628 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 KCTD10Q9H3F6 313 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZFYVE28Q9HCC9 887 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 COPRSQ9NQ92 184 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ABCB10Q9NRK6 738 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 FAM49BQ9NUQ9 324 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 USE1Q9NZ43 259 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 SRP68Q9UHB9 627 aaKnown RBP4.19□□□□□ -1.74
NEDD4-201ENST00000338963 RIPK3Q9Y572 518 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 TRPV2Q9Y5S1 764 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 ZFYVE16Q7Z3T8 1539 aa4.19□□□□□ -1.74
NEDD4-201ENST00000338963 CEP170BQ9Y4F5 1589 aaPredicted RBP4.18□□□□□ -1.74
NEDD4-201ENST00000338963 E9PAM4 449 aa4.18□□□□□ -1.74
NEDD4-201ENST00000338963 PLOD2O00469 737 aa4.18□□□□□ -1.74
NEDD4-201ENST00000338963 SUPT7LO94864 414 aa4.18□□□□□ -1.74
NEDD4-201ENST00000338963 PROS1P07225 676 aa4.18□□□□□ -1.74
NEDD4-201ENST00000338963 DLDP09622 509 aaKnown RBP4.18□□□□□ -1.74
NEDD4-201ENST00000338963 YBX3P16989 372 aaKnown RBP eCLIP4.18□□□□□ -1.74
NEDD4-201ENST00000338963 SLC9A1P19634 815 aa4.18□□□□□ -1.74
NEDD4-201ENST00000338963 MMP8P22894 467 aa4.18□□□□□ -1.74
NEDD4-201ENST00000338963 GCAP28676 217 aa4.18□□□□□ -1.74
NEDD4-201ENST00000338963 CHRNA5P30532 468 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms