RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SDC3O75056 442 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 PAK4O96013 591 aaPredicted RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 ITGAVP06756 1048 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 C1QTNF9P0C862 333 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 ADKP55263 362 aaKnown RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 INAVAQ3KP66 663 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 PTAR1Q7Z6K3 402 aaPredicted RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 RAB44Q7Z6P3 723 aaPredicted RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 SLC22A18ASQ8N1D0 253 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 OXR1Q8N573 874 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 CTNNBL1Q8WYA6 563 aaPredicted RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 FEM1CQ96JP0 617 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 CHP1Q99653 195 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 CDC6Q99741 560 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 CINPQ9BW66 212 aaPredicted RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 ERVMER34-1Q9H9K5 563 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 FTSJ1Q9UET6 329 aa16.5■□□□□ 0.23
LSM1-201ENST00000311351 IPO11Q9UI26 975 aaKnown RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 APOBEC2Q9Y235 224 aaKnown RBP16.5■□□□□ 0.23
LSM1-201ENST00000311351 KMT2BQ9UMN6 2715 aaPredicted RBP16.49■□□□□ 0.23
LSM1-201ENST00000311351 POM121BA6NF01 834 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 A6NNZ2 444 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 MYO1FO00160 1098 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 MUSKO15146 869 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 YKT6O15498 198 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 MAGEC1O60732 1142 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 PALMO75781 387 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 TRIM16O95361 564 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 CD48P09326 243 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 TIMP2P16035 220 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 RXRGP48443 463 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 CDH6P55285 790 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 IL10RBQ08334 325 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 MMRN1Q13201 1228 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 KRT81Q14533 505 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 CCDC157Q569K6 752 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 TMCO3Q6UWJ1 677 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 KANSL1Q7Z3B3 1105 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 ABI3BPQ7Z7G0 1075 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 ZSWIM9Q86XI8 627 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 EID2Q8N6I1 236 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 ADAMTS14Q8WXS8 1223 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 TSC1Q92574 1164 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 WRAP53Q9BUR4 548 aaKnown RBP16.49■□□□□ 0.23
LSM1-201ENST00000311351 C1QTNF2Q9BXJ5 285 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 TMEM121BQ9BXQ6 578 aaPredicted RBP16.49■□□□□ 0.23
LSM1-201ENST00000311351 CPEB1Q9BZB8 566 aaKnown RBP16.49■□□□□ 0.23
LSM1-201ENST00000311351 SPTLC3Q9NUV7 552 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 KLHL11Q9NVR0 708 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 ZNHIT6Q9NWK9 470 aaKnown RBP16.49■□□□□ 0.23
LSM1-201ENST00000311351 DKK3Q9UBP4 350 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 PLXNB3Q9ULL4 1909 aa16.49■□□□□ 0.23
LSM1-201ENST00000311351 SSU72P8A0A1W2PR75 194 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 TSPAN11A1L157 253 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 TMEM110-MUSTN1A8MSY1 372 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 AKR1B10O60218 316 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 BUB1BO60566 1050 aaPredicted RBP16.48■□□□□ 0.23
LSM1-201ENST00000311351 PROSCO94903 275 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 PRKCGP05129 697 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 TPM1P09493 284 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 H2AFZP0C0S5 128 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 TAS2R40P59535 323 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 ATP13A4Q4VNC1 1196 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 TMCO4Q5TGY1 634 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 UNQ6494/PRO21346Q6UXR6 183 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 KYAT3Q6YP21 454 aaKnown RBP16.48■□□□□ 0.23
LSM1-201ENST00000311351 Q6ZSR6 202 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 H2AFVQ71UI9 128 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 SRLQ86TD4 932 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 TTC7BQ86TV6 843 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 CAMK1DQ8IU85 385 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 LZTR1Q8N653 840 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 BMFQ96LC9 184 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 KLF6Q99612 283 aaPredicted RBP16.48■□□□□ 0.23
LSM1-201ENST00000311351 UVRAGQ9P2Y5 699 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 NEUROG3Q9Y4Z2 214 aa16.48■□□□□ 0.23
LSM1-201ENST00000311351 ASPMQ8IZT6 3477 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 TNFSF14O43557 240 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 MMP20O60882 483 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 XPAP23025 273 aaPredicted RBP16.47■□□□□ 0.23
LSM1-201ENST00000311351 IGFALSP35858 605 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 ARSEP51690 589 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 SEMG2Q02383 582 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 SLC10A7Q0GE19 358 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 SGCGQ13326 291 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 LBRQ14739 615 aaKnown RBP16.47■□□□□ 0.23
LSM1-201ENST00000311351 ZNF542PQ5EBM4 170 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 TPRG1LQ5T0D9 272 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 ZSCAN30Q86W11 494 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 CXorf40AQ8TE69 158 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 GATA6Q92908 595 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 NSMCE3Q96MG7 304 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 SUV39H2Q9H5I1 410 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 NHEJ1Q9H9Q4 299 aaPredicted RBP16.47■□□□□ 0.23
LSM1-201ENST00000311351 GPR27Q9NS67 375 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 COQ6Q9Y2Z9 468 aa16.47■□□□□ 0.23
LSM1-201ENST00000311351 GOLGA4Q13439 2230 aaKnown RBP16.47■□□□□ 0.23
LSM1-201ENST00000311351 TTC24A2A3L6 582 aaPredicted RBP16.46■□□□□ 0.23
LSM1-201ENST00000311351 MFSD11O43934 449 aa16.46■□□□□ 0.23
LSM1-201ENST00000311351 PEX11BO96011 259 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms