RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 SAGE1Q9NXZ1 904 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 DPP3Q9NY33 737 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SIX4Q9UIU6 781 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 C2orf74A8MZ97 194 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 RNF103O00237 685 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 NUDT2P50583 147 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 CAMK2GQ13555 558 aaPredicted RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 DENND6AQ8IWF6 608 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 GALNT12Q8IXK2 581 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 CKAP2Q8WWK9 683 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 NUAK2Q9H093 628 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 JMJD4Q9H9V9 463 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 RAVER2Q9HCJ3 691 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 MRPL39Q9NYK5 338 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 ASB3Q9Y575 518 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 EML1O00423 815 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 LATO43561 262 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 MTRF1O75570 445 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 TM7SF2O76062 418 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 FARP2O94887 1054 aaPredicted RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 IFNGP01579 166 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 NUDT1P36639 197 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 CLK3P49761 638 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 RAB10P61026 200 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 UTS2BQ765I0 119 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 KCNMB4Q86W47 210 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 KIAA1958Q8N8K9 716 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SLC13A1Q9BZW2 595 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 ATP13A3Q9H7F0 1226 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 LRRC4CQ9HCJ2 640 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 M0QYT0 321 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 AVILO75366 819 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 ZBTB48P10074 688 aaPredicted RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 BMP7P18075 431 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 TMPRSS11AQ6ZMR5 421 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 LRRC20Q8TCA0 184 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 PARD3BQ8TEW8 1205 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 OVCA2Q8WZ82 227 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 MRPS31Q92665 395 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 LRRC4BQ9NT99 713 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 ZNF112Q9UJU3 913 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 PSMD13Q9UNM6 376 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SNX13Q9Y5W8 968 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 PRR36Q9H6K5 1346 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 RAD51CO43502 376 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 RNASE9P60153 205 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 ZNHIT3Q15649 155 aaPredicted RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 GPAT2Q6NUI2 795 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 IQCKQ8N0W5 287 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 RHOBTB2Q9BYZ6 727 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 FKBPLQ9UIM3 349 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 TXNP10599 105 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 HPGDP15428 266 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 FGFR2P21802 821 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 CD47Q08722 323 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SLC4A11Q8NBS3 891 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 ASB9Q96DX5 294 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 CERS2Q96G23 380 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 GLS2Q9UI32 602 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 ANGPT4Q9Y264 503 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SPO11Q9Y5K1 396 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 BCORQ6W2J9 1755 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 C4AP0C0L4 1744 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 C4BP0C0L5 1744 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SCN2AQ99250 2005 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 PRDX5P30044 214 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SHMT1P34896 483 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 BOP1Q14137 746 aaKnown RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 RIOX2Q8IUF8 465 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 C10orf107Q8IVU9 208 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 ELMO1Q92556 727 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 KCNN1Q92952 543 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 BTN2A3PQ96KV6 586 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 MTG1Q9BT17 334 aaPredicted RBP4.05□□□□□ -1.76
USH2A-201ENST00000307340 VRTNQ9H8Y1 702 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 PLLPQ9Y342 182 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 ADAMTSL3P82987 1691 aa4.05□□□□□ -1.76
USH2A-201ENST00000307340 SMIM35A0A1B0GVV1 85 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 IGSF6O95976 241 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 ITGA2BP08514 1039 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 EPHB2P29323 1055 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 SULT1E1P49888 294 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 NR1D2Q14995 579 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 PLCL1Q15111 1095 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 TBC1D10CQ8IV04 446 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 OR6Y1Q8NGX8 325 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 STYXQ8WUJ0 223 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 TNFRSF25Q93038 417 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 RHBDF1Q96CC6 855 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 PABPC5Q96DU9 382 aaKnown RBP4.04□□□□□ -1.76
USH2A-201ENST00000307340 DEPDC7Q96QD5 511 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 CDC42EP4Q9H3Q1 356 aaKnown RBP4.04□□□□□ -1.76
USH2A-201ENST00000307340 CLN6Q9NWW5 311 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 OR6C75A6NL08 312 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 ULK1O75385 1050 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 SLC7A5Q01650 507 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 PRKD1Q15139 912 aaPredicted RBP4.04□□□□□ -1.76
USH2A-201ENST00000307340 MAPKAPK3Q16644 382 aa4.04□□□□□ -1.76
USH2A-201ENST00000307340 FAM98CQ17RN3 349 aaKnown RBP4.04□□□□□ -1.76
USH2A-201ENST00000307340 RTL6Q6ICC9 239 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms