RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 TRAF7Q6Q0C0 670 aa12.89□□□□□ -0.35
PTCD1-201ENST00000292478 OR4L1Q8NH43 312 aa12.89□□□□□ -0.35
PTCD1-201ENST00000292478 GLOD4Q9HC38 313 aa12.89□□□□□ -0.35
PTCD1-201ENST00000292478 TBC1D30Q9Y2I9 924 aa12.89□□□□□ -0.35
PTCD1-201ENST00000292478 FMN2Q9NZ56 1722 aa12.89□□□□□ -0.35
PTCD1-201ENST00000292478 BBIP1A8MTZ0 92 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 ULK1O75385 1050 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 FGF19O95750 216 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 BPGMP07738 259 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 ADRA1BP35368 520 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PKNOX1P55347 436 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 FAM110CQ1W6H9 321 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 TIMM50Q3ZCQ8 353 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PCDH20Q8N6Y1 951 aaKnown RBP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 C12orf29Q8N999 325 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 ZFP28Q8NHY6 868 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 TTYH3Q9C0H2 523 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 MED1Q15648 1581 aaPredicted RBP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 TBL1XO60907 577 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 IDO1P14902 403 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PTPN9P43378 593 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 CHN2P52757 468 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PTPRNQ16849 979 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 RNF148Q8N7C7 305 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 LRRC57Q8N9N7 239 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 C19orf18Q8NEA5 215 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 CXorf40AQ8TE69 158 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 CD101Q93033 1021 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SH3GL2Q99962 352 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 RNPEPQ9H4A4 650 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PSME2Q9UL46 239 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 KPNA4O00629 521 aaPredicted RBP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SERPINI2O75830 405 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 INAQ16352 499 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PARP15Q460N3 678 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 TREML2Q5T2D2 321 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 DENND1CQ8IV53 801 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 TRPM4Q8TD43 1214 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 CSGALNACT1Q8TDX6 532 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 RIBC2Q9H4K1 309 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 LRRC4CQ9HCJ2 640 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 ZNF180Q9UJW8 692 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 AGO1Q9UL18 857 aaKnown RBP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 HSMCR30P0CW71 290 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 CD52P31358 61 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PSMD5Q16401 504 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 TEX44Q53QW1 395 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PRAMEF19Q5SWL8 479 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 DHDDSQ86SQ9 333 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 PYDC1Q8WXC3 89 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SKA1Q96BD8 255 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 MIEF2Q96C03 454 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 FCRL2Q96LA5 508 aaPredicted RBP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 CSPG4P5Q96PW8 444 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 VWA7Q9Y334 891 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 CNTNAP1P78357 1384 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 C1QTNF3-AMACRE9PGA6 284 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 AZIN1O14977 448 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 MYL12AP19105 171 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 MAPK9P45984 424 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SLC25A3Q00325 362 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 RGMBQ6NW40 437 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SLC26A9Q7LBE3 791 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 ZSCAN18Q8TBC5 510 aaPredicted RBP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 QKIQ96PU8 341 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SPATA5L1Q9BVQ7 753 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 FGFBP2Q9BYJ0 223 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 EPB41L4BQ9H329 900 aa12.88□□□□□ -0.35
PTCD1-201ENST00000292478 SNAP91O60641 907 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 BANF1O75531 89 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 ITGA2P17301 1181 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 PAICSP22234 425 aaKnown RBP12.87□□□□□ -0.35
PTCD1-201ENST00000292478 ABL2P42684 1182 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 WNT3AP56704 352 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 SP3Q02447 781 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 MAPKAPK3Q16644 382 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 SH3BP5LQ7L8J4 393 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 TRAPPC5Q8IUR0 188 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 ULK2Q8IYT8 1036 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 RBFAQ8N0V3 343 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 AGAP11Q8TF27 550 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 BTN2A3PQ96KV6 586 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 RTKNQ9BST9 563 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 FAIM2Q9BWQ8 316 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 GEMIN8Q9NWZ8 242 aaKnown RBP12.87□□□□□ -0.35
PTCD1-201ENST00000292478 XPR1Q9UBH6 696 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 PCDHA2Q9Y5H9 948 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 SMIM28A0A1B0GU29 152 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 HIRAP54198 1017 aaPredicted RBP12.87□□□□□ -0.35
PTCD1-201ENST00000292478 PRKG2Q13237 762 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 TYW3Q6IPR3 259 aaKnown RBP12.87□□□□□ -0.35
PTCD1-201ENST00000292478 TPGS1Q6ZTW0 290 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 PAGE2Q7Z2X7 111 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 CLVS1Q8IUQ0 354 aaPredicted RBP12.87□□□□□ -0.35
PTCD1-201ENST00000292478 TMEM199Q8N511 208 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 C8orf4Q9NR00 106 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 DMAC2Q9NW81 257 aa12.87□□□□□ -0.35
PTCD1-201ENST00000292478 HMGB3O15347 200 aaKnown RBP12.87□□□□□ -0.35
PTCD1-201ENST00000292478 CLDN11O75508 207 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms