RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ABCG4Q9H172 646 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 SLC12A4Q9UP95 1085 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 A0A1B0GVM2 712 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 TCAF2A6NFQ2 919 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ACSL4O60488 711 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 HNF4AP41235 474 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 FAM187BQ17R55 369 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 NETO2Q8NC67 525 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ZFP28Q8NHY6 868 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ACMSDQ8TDX5 336 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 PCED1BQ96HM7 432 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 FEM1CQ96JP0 617 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 EFR3BQ9Y2G0 817 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 C5orf60A6NFR6 353 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ARHGEF9O43307 516 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 EPN2O95208 641 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ENO2P09104 434 aaPredicted RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ATP6V1B1P15313 513 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 MC4RP32245 332 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 WASP42768 502 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 PRKAG1P54619 331 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 RAB10P61026 200 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 CTBP1Q13363 440 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 DYNC1I2Q13409 638 aaKnown RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 CCDC142Q17RM4 750 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 SLC10A6Q3KNW5 377 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 SNX32Q86XE0 403 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 MTFMTQ96DP5 389 aaKnown RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 OXNAD1Q96HP4 312 aaPredicted RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ACRP10323 421 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ELP6Q0PNE2 266 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 NCF4Q15080 339 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ZNHIT3Q15649 155 aaPredicted RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 CYP4Z2PQ8N1L4 340 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 POU5F2Q8N7G0 328 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 UTP15Q8TED0 518 aaKnown RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 AENQ8WTP8 325 aaKnown RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 LRRN4Q8WUT4 740 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 PROX1Q92786 737 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 PCDHB18PQ96TA0 734 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 BDH2Q9BUT1 245 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 SLC39A8Q9C0K1 460 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 AGO3Q9H9G7 860 aaKnown RBP18.66■□□□□ 0.58
PCDH1-201ENST00000287008 ZFYVE1Q9HBF4 777 aa18.66■□□□□ 0.58
PCDH1-201ENST00000287008 NEK3P51956 506 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 IRX1P78414 480 aaPredicted RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 XYLT1Q86Y38 959 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 PIWIL2Q8TC59 973 aaKnown RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 RERGQ96A58 199 aaPredicted RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 FZD8Q9H461 694 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 PTPRJQ12913 1337 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 CDK14O94921 469 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 PRNPP04156 253 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 C21orf59P57076 290 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 CRTC3Q6UUV7 619 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 DHFR2Q86XF0 187 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 IRF2BP1Q8IU81 584 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 OSBPL10Q9BXB5 764 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 ACE2Q9BYF1 805 aaPredicted RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 NOD2Q9HC29 1040 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 MYBPHLA2RUH7 354 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 ARVCFO00192 962 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 PRMT5O14744 637 aaPredicted RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 CD3EAPO15446 510 aaKnown RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 CNOT3O75175 753 aaKnown RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 NTRK1P04629 796 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 PSMC3P17980 439 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 HTR7P34969 479 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 PMF1Q6P1K2 205 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 ACTRT2Q8TDY3 377 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 POLR1DQ9Y2S0 133 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 AP3M1Q9Y2T2 418 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 SLC45A1Q9Y2W3 748 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 GSAPA4D1B5 854 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 UBTFL6P0CB48 400 aaPredicted RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 RPL17P18621 184 aaKnown RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 RFWD3Q6PCD5 774 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 CNBD2Q96M20 576 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 CYLDQ9NQC7 956 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 KLHL20Q9Y2M5 609 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 HBS1LQ9Y450 684 aaKnown RBP18.65■□□□□ 0.58
PCDH1-201ENST00000287008 CPQQ9Y646 472 aa18.65■□□□□ 0.58
PCDH1-201ENST00000287008 LTBP3Q9NS15 1303 aa18.64■□□□□ 0.58
PCDH1-201ENST00000287008 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.64■□□□□ 0.57
PCDH1-201ENST00000287008 RCCD1A6NED2 376 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 SERPINB3P29508 390 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 COPZ1P61923 177 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 SAMD4BQ5PRF9 694 aaKnown RBP18.64■□□□□ 0.57
PCDH1-201ENST00000287008 CHST9Q7L1S5 443 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 ZNF398Q8TD17 642 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 ALG3Q92685 438 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 NTPCRQ9BSD7 190 aaKnown RBP18.64■□□□□ 0.57
PCDH1-201ENST00000287008 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.64■□□□□ 0.57
PCDH1-201ENST00000287008 DSG1Q02413 1049 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 FGD3Q5JSP0 725 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 INTS11Q5TA45 600 aaKnown RBP18.64■□□□□ 0.57
PCDH1-201ENST00000287008 ZNF662Q6ZS27 426 aa18.64■□□□□ 0.57
PCDH1-201ENST00000287008 MRPL57Q9BQC6 102 aaKnown RBP18.64■□□□□ 0.57
PCDH1-201ENST00000287008 ROGDIQ9GZN7 287 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms