RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 FGF1P05230 155 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 RPL7AP62424 266 aaKnown RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 SERPINA13PQ6UXR4 307 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 PDGFDQ9GZP0 370 aaPredicted RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 CNGB3Q9NQW8 809 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 TSPAN19P0C672 248 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 ITGB5P18084 799 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 PKNOX1P55347 436 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 LSM12Q3MHD2 195 aaKnown RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 TCAIMQ8N3R3 496 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 ZSCAN18Q8TBC5 510 aaPredicted RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 SPPL2BQ8TCT7 592 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 PYDC1Q8WXC3 89 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 TRAPPC9Q96Q05 1148 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 SPRTNQ9H040 489 aaPredicted RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 H3BN98 237 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 CACNB4O00305 520 aaPredicted RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 CCNA2P20248 432 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 ZDHHC13Q8IUH4 622 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 IL31RAQ8NI17 732 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 ATRNO75882 1429 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 SLURP2P0DP57 97 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 WARSP23381 471 aaKnown RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 GPD2P43304 727 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 NAGLUP54802 743 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 PSMD5Q16401 504 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 ANXA8L1Q5VT79 327 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 WSCD1Q658N2 575 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 C16orf59Q7L2K0 433 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 OR5B17Q8NGF7 314 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 RNF19AQ9NV58 838 aa19.29■□□□□ 0.68
UPF1-201ENST00000262803 LEF1Q9UJU2 399 aaPredicted RBP19.29■□□□□ 0.68
UPF1-201ENST00000262803 FGRP09769 529 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 ARSHQ5FYA8 562 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 RAET1GQ6H3X3 334 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 CPA6Q8N4T0 437 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 CENPIQ92674 756 aaPredicted RBP19.28■□□□□ 0.68
UPF1-201ENST00000262803 ACO2Q99798 780 aaKnown RBP19.28■□□□□ 0.68
UPF1-201ENST00000262803 KIAA1522Q9P206 1035 aaPredicted RBP19.28■□□□□ 0.68
UPF1-201ENST00000262803 hCG_1818297A0A087WSY0 165 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 BANF1O75531 89 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 KCNJ2P63252 427 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 DGUOKQ16854 277 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 ZNF618Q5T7W0 954 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 ZNF621Q6ZSS3 439 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 ARCQ7LC44 396 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 GPR142Q7Z601 462 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 RNF145Q96MT1 663 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 TBC1D10AQ9BXI6 508 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 RERGLQ9H628 205 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.28■□□□□ 0.68
UPF1-201ENST00000262803 MARSP56192 900 aaKnown RBP19.28■□□□□ 0.68
UPF1-201ENST00000262803 MRPS22P82650 360 aaKnown RBP19.28■□□□□ 0.68
UPF1-201ENST00000262803 PDZK1Q5T2W1 519 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 NELL1Q92832 810 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 PURBQ96QR8 312 aaKnown RBP19.28■□□□□ 0.68
UPF1-201ENST00000262803 ZDHHC4Q9NPG8 344 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 ANAPC2Q9UJX6 822 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 SMIM35A0A1B0GVV1 85 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 SPATA31C2B4DYI2 1134 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 PSMB9P28065 219 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 ARMC4Q5T2S8 1044 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 ZNF398Q8TD17 642 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 SPACA7Q96KW9 195 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 GALNT8Q9NY28 637 aa19.28■□□□□ 0.68
UPF1-201ENST00000262803 OTCP00480 354 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 BST1Q10588 318 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 CAPSQ13938 189 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 HYIQ5T013 277 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 DNAJC14Q6Y2X3 702 aaPredicted RBP19.27■□□□□ 0.68
UPF1-201ENST00000262803 GATAD2AQ86YP4 633 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 KIAA0319LQ8IZA0 1049 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 CERS2Q96G23 380 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 FZD1Q9UP38 647 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 TNFSF9P41273 254 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 GALNT18Q6P9A2 607 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 UNC5AQ6ZN44 842 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 STK32CQ86UX6 486 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 TPD52L3Q96J77 140 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 HDHD2Q9H0R4 259 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 RIBC2Q9H4K1 309 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 NUDT5Q9UKK9 219 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 CASZ1Q86V15 1759 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 LYPLA2O95372 231 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 TPP2P29144 1249 aaPredicted RBP19.27■□□□□ 0.68
UPF1-201ENST00000262803 TAS2R40P59535 323 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 NAIF1Q69YI7 327 aaPredicted RBP19.27■□□□□ 0.68
UPF1-201ENST00000262803 ZNF549Q6P9A3 640 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 KIAA1324Q6UXG2 1013 aaKnown RBP19.27■□□□□ 0.68
UPF1-201ENST00000262803 DEPDC4Q8N2C3 294 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 DHRSXQ8N5I4 330 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 FHDC1Q9C0D6 1143 aaPredicted RBP19.27■□□□□ 0.68
UPF1-201ENST00000262803 CDT1Q9H211 546 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 ACSS3Q9H6R3 686 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 KCTD5Q9NXV2 234 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 MYRFQ9Y2G1 1151 aa19.27■□□□□ 0.68
UPF1-201ENST00000262803 TBL1XO60907 577 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 PIAS1O75925 651 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 POLD2P49005 469 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 CCDC185Q8N715 623 aa19.27■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms