RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SEPT3Q9UH03 358 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 ZFP69BQ9UJL9 534 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 MID2Q9UJV3 735 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 STOML2Q9UJZ1 356 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 PTPRSQ13332 1948 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.29■■□□□ 1.16
PNKP-220ENST00000627232 A0A0G2JND7 137 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 A0A1B0GVM2 712 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 TRIM43BA6NCK2 446 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 TCAF2A6NFQ2 919 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 DNAJC6O75061 913 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 UNC5CO95185 931 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 SERPINE1P05121 402 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 APOA4P06727 396 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 COL6A2P12110 1019 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 HLA-DPA1P20036 260 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 ITGB8P26012 769 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 GABRB3P28472 473 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 IRX4P78413 519 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 ZNF177Q13360 481 aaPredicted RBP22.29■■□□□ 1.16
PNKP-220ENST00000627232 SIRPB2Q5JXA9 342 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 TMCO2Q7Z6W1 182 aaPredicted RBP22.29■■□□□ 1.16
PNKP-220ENST00000627232 ITIH5Q86UX2 942 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 TMEM199Q8N511 208 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 TRIM43Q96BQ3 446 aaPredicted RBP22.29■■□□□ 1.16
PNKP-220ENST00000627232 PAWRQ96IZ0 340 aaKnown RBP22.29■■□□□ 1.16
PNKP-220ENST00000627232 MGME1Q9BQP7 344 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 SIKE1Q9BRV8 207 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 RNF38Q9H0F5 515 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 CAB39LQ9H9S4 337 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 SAR1AQ9NR31 198 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 GKN1Q9NS71 199 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 AGO1Q9UL18 857 aaKnown RBP22.29■■□□□ 1.16
PNKP-220ENST00000627232 SLC39A10Q9ULF5 831 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 SSX2IPQ9Y2D8 614 aa22.29■■□□□ 1.16
PNKP-220ENST00000627232 A0A0D9SEW6 157 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 C2orf78A6NCI8 922 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 MROH6A6NGR9 719 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 FGF1P05230 155 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 ATXN1LP0C7T5 689 aaKnown RBP22.28■■□□□ 1.16
PNKP-220ENST00000627232 CPA3P15088 417 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 OXCT1P55809 520 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 RPS24P62847 133 aaKnown RBP22.28■■□□□ 1.16
PNKP-220ENST00000627232 TAF1BQ53T94 588 aaPredicted RBP22.28■■□□□ 1.16
PNKP-220ENST00000627232 IL31Q6EBC2 164 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 NEPROQ6NW34 567 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 GALNT7Q86SF2 657 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 PLD6Q8N2A8 252 aaKnown RBP22.28■■□□□ 1.16
PNKP-220ENST00000627232 OR7D4Q8NG98 312 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 PEX13Q92968 403 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 UBA2Q9UBT2 640 aaPredicted RBP22.28■■□□□ 1.16
PNKP-220ENST00000627232 TLK1Q9UKI8 766 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 FBXO5Q9UKT4 447 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 TBC1D30Q9Y2I9 924 aa22.28■■□□□ 1.16
PNKP-220ENST00000627232 LILRB3O75022 631 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 F11P03951 625 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 ATP5BP06576 529 aaKnown RBP22.27■■□□□ 1.16
PNKP-220ENST00000627232 RHOCP08134 193 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 RAG1P15918 1043 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 ABCG1P45844 678 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 CD151P48509 253 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 ILF2Q12905 390 aaKnown RBP22.27■■□□□ 1.16
PNKP-220ENST00000627232 USP10Q14694 798 aaKnown RBP22.27■■□□□ 1.16
PNKP-220ENST00000627232 PABPC1LQ4VXU2 614 aaKnown RBP22.27■■□□□ 1.16
PNKP-220ENST00000627232 ZNF783Q6ZMS7 281 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 ASRGL1Q7L266 308 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 DENND6AQ8IWF6 608 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 LMNTD2Q8IXW0 634 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 RDH11Q8TC12 318 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 IFT43Q96FT9 208 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 TSNARE1Q96NA8 513 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 YME1L1Q96TA2 773 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 ACE2Q9BYF1 805 aaPredicted RBP22.27■■□□□ 1.16
PNKP-220ENST00000627232 ASB3Q9Y575 518 aa22.27■■□□□ 1.16
PNKP-220ENST00000627232 HGSO14964 777 aaPredicted RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 MUSKO15146 869 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 SLC7A4O43246 635 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 SERPINF2P08697 491 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 F7P08709 466 aaPredicted RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 MYL2P10916 166 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 MBL2P11226 248 aaPredicted RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 CES1P23141 567 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 SLC1A2P43004 574 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 MPP1Q00013 466 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 CTBP1Q13363 440 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 SLC12A1Q13621 1099 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 DLG2Q15700 870 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 FBXW10Q5XX13 1052 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 TMEM150AQ86TG1 271 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 MTDHQ86UE4 582 aaKnown RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 C10orf107Q8IVU9 208 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ACVR1CQ8NER5 493 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 OR52K2Q8NGK3 314 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 SREK1Q8WXA9 508 aaKnown RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 SKA1Q96BD8 255 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 KLHL29Q96CT2 875 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 PSKH2Q96QS6 385 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 TUBB6Q9BUF5 446 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ZNF358Q9NW07 568 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 HEY2Q9UBP5 337 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms