RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	CDH4	P55283	916 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	TNK2	Q07912	1038 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	SLC10A7	Q0GE19	358 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	TMED2	Q15363	201 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	ANO4	Q32M45	955 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	ADGRD1	Q6QNK2	874 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	PPP1R14B	Q96C90	147 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	RMDN2	Q96LZ7	410 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	PLEKHG4B	Q96PX9	1271 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	LRRC37B	Q96QE4	947 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	CYTH2	Q99418	400 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	PIDD1	Q9HB75	910 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	SAR1A	Q9NR31	198 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	SMYD2	Q9NRG4	433 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	SYBU	Q9NX95	663 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	PCDHA11	Q9Y5I1	949 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	CPQ	Q9Y646	472 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	CDH23	Q9H251	3354 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318		A0A0D9SEW6	157 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	LATS1	O95835	1130 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	HOXD9	P28356	352 aa	Predicted RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	CCR2	P41597	374 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	IL9R	Q01113	521 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	IL10RB	Q08334	325 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	RABGAP1L	Q5R372	815 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	STXBP5	Q5T5C0	1151 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	TRMT10B	Q6PF06	316 aa	Known RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	GSDMB	Q8TAX9	411 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	SLC44A1	Q8WWI5	657 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	MRRF	Q96E11	262 aa	Known RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	LRRC40	Q9H9A6	602 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	SP110	Q9HB58	689 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	PDF	Q9HBH1	243 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	GGT7	Q9UJ14	662 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	COMMD3-BMI1	R4GMX3	469 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	TRANK1	O15050	2925 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	MIA3	Q5JRA6	1907 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318		A0A1W2PRU2	124 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	CXorf49	A8MYA2	514 aa	Predicted RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	CCL16	O15467	120 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	ZSCAN9	O15535	394 aa	Predicted RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	PRAMEF11	O60813	436 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	PYGB	P11216	843 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	GJA1	P17302	382 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	RENBP	P51606	427 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	CCDC6	Q16204	474 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	RNF220	Q5VTB9	566 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	RGS9BP	Q6ZS82	235 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	TRABD2A	Q86V40	505 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	LONP2	Q86WA8	852 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	MZB1	Q8WU39	189 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	MRPS31	Q92665	395 aa	Known RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	PITPNM3	Q9BZ71	974 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	HCFC1R1	Q9NWW0	138 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	MOCS1	Q9NZB8	636 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	TRIM33	Q9UPN9	1127 aa		15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	AAR2	Q9Y312	384 aa	Known RBP	15.6	■□□□□ 0.09
DDX39A-209	ENST00000589318	SCAMP3	O14828	347 aa	Known RBP	15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	TSPAN3	O60637	253 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	CLDN11	O75508	207 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	RFPL2	O75678	378 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	RB1	P06400	928 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	CA3	P07451	260 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	PTPN4	P29074	926 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	ADRA1A	P35348	466 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	EPHA5	P54756	1037 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	SLC7A9	P82251	487 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	PRPSAP1	Q14558	356 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	IHH	Q14623	411 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	PPM1L	Q5SGD2	360 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	CYS1	Q717R9	158 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	CHST9	Q7L1S5	443 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	FAM217A	Q8IXS0	508 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	PGBD5	Q8N414	524 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	OR7D4	Q8NG98	312 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	GATA6	Q92908	595 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	PABPC5	Q96DU9	382 aa	Known RBP	15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	APOL2	Q9BQE5	337 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	CORO1B	Q9BR76	489 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	TBC1D10A	Q9BXI6	508 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	MYLK2	Q9H1R3	596 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	MAGEH1	Q9H213	219 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	MAN1C1	Q9NR34	630 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318	NMRK1	Q9NWW6	199 aa		15.59	■□□□□ 0.09
DDX39A-209	ENST00000589318		A0A1B0GVM2	712 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	TCAF2	A6NFQ2	919 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	FAM159B	A6NKW6	160 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	PSMD3	O43242	534 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	ANXA9	O76027	345 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	ALDH1A2	O94788	518 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	PGAM1	P18669	254 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	GSTT1	P30711	240 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	NUMB	P49757	651 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	SLC18A1	P54219	525 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	GNA12	Q03113	381 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	CERCAM	Q5T4B2	595 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	MARC1	Q5VT66	337 aa		15.58	■□□□□ 0.09

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms