RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 TAF1BQ53T94 588 aaPredicted RBP11.81□□□□□ -0.52
LIG3-207ENST00000586119 KIAA1161Q6NSJ0 714 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 NLRP14Q86W24 1093 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 PARGQ86W56 976 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 LSM14AQ8ND56 463 aaKnown RBP11.81□□□□□ -0.52
LIG3-207ENST00000586119 SLC20A1Q8WUM9 679 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 KCNE4Q8WWG9 221 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 RXFP2Q8WXD0 754 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 ARHGEF2Q92974 986 aaKnown RBP11.81□□□□□ -0.52
LIG3-207ENST00000586119 CENPTQ96BT3 561 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 PPP1R16AQ96I34 528 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 KLHL32Q96NJ5 620 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 LENG8Q96PV6 779 aaPredicted RBP11.81□□□□□ -0.52
LIG3-207ENST00000586119 NAA15Q9BXJ9 866 aaKnown RBP11.81□□□□□ -0.52
LIG3-207ENST00000586119 CEP44Q9C0F1 390 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 CLPBQ9H078 707 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 KLC2Q9H0B6 622 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 NDST4Q9H3R1 872 aa11.81□□□□□ -0.52
LIG3-207ENST00000586119 METTL5Q9NRN9 209 aaKnown RBP11.81□□□□□ -0.52
LIG3-207ENST00000586119 FLNBO75369 2602 aaKnown RBP11.81□□□□□ -0.52
LIG3-207ENST00000586119 CFAP46Q8IYW2 2715 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 KRIT1O00522 736 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 INSIG1O15503 277 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 AP1G1O43747 822 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 PRKCSHP14314 528 aaPredicted RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 CHRNB2P17787 502 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 ADRA1BP35368 520 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 IGFALSP35858 605 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 KLK7P49862 253 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 DUSP3P51452 185 aaPredicted RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 BPIFB4P59827 614 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 NOMO3P69849 1222 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 TPD52L1Q16890 204 aaPredicted RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 MYLK3Q32MK0 819 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 ZNF805Q5CZA5 627 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 PRRT3Q5FWE3 981 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 MANEALQ5VSG8 457 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 KIAA1614Q5VZ46 1190 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 RWDD4Q6NW29 188 aaKnown RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 ZCCHC8Q6NZY4 707 aaKnown RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 ZNF783Q6ZMS7 281 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 VPS36Q86VN1 386 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 DCP2Q8IU60 420 aaKnown RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 SLC35F3Q8IY50 421 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 CCDC185Q8N715 623 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 SLC30A5Q8TAD4 765 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 TTC9Q92623 222 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 SLC46A1Q96NT5 459 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 TUBGCP2Q9BSJ2 902 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 DUSP23Q9BVJ7 150 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 SAMSN1Q9NSI8 373 aaKnown RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 PPARGC1AQ9UBK2 798 aaKnown RBP11.8□□□□□ -0.52
LIG3-207ENST00000586119 OR12D3Q9UGF7 316 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 SALL4Q9UJQ4 1053 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 NEU3Q9UQ49 428 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 COQ6Q9Y2Z9 468 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 CSNK1G3Q9Y6M4 447 aa11.8□□□□□ -0.52
LIG3-207ENST00000586119 AGRPO00253 132 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 NEMP1O14524 444 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 AREL1O15033 823 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 YY2O15391 372 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 TSPAN6O43657 245 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 LRIG2O94898 1065 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 TIMP2P16035 220 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 TSHRP16473 764 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 SCNN1AP37088 669 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 PDX1P52945 283 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 TMPRSS3P57727 454 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 ERVPABLB-1P60509 514 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 SRSF6Q13247 344 aaKnown RBP11.79□□□□□ -0.52
LIG3-207ENST00000586119 NR0B2Q15466 257 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 CT47A1Q5JQC4 288 aaPredicted RBP11.79□□□□□ -0.52
LIG3-207ENST00000586119 KCTD16Q68DU8 428 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 TTC7BQ86TV6 843 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 PHACTR4Q8IZ21 702 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 LSMEM2Q8N112 164 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 PYROXD2Q8N2H3 581 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 OR2AP1Q8NGE2 309 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 FAM174AQ8TBP5 190 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 EPS8L1Q8TE68 723 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 FUBP1Q96AE4 644 aaKnown RBP11.79□□□□□ -0.52
LIG3-207ENST00000586119 IL12RB2Q99665 862 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 WRAP53Q9BUR4 548 aaKnown RBP11.79□□□□□ -0.52
LIG3-207ENST00000586119 LRRC61Q9BV99 259 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 BOCQ9BWV1 1114 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 NOL6Q9H6R4 1146 aaKnown RBP11.79□□□□□ -0.52
LIG3-207ENST00000586119 RABGEF1Q9UJ41 708 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 SSUH2Q9Y2M2 353 aa11.79□□□□□ -0.52
LIG3-207ENST00000586119 ANKRD36A6QL64 1941 aa11.78□□□□□ -0.52
LIG3-207ENST00000586119 H3BM21 787 aa11.78□□□□□ -0.52
LIG3-207ENST00000586119 ERVH48-1M5A8F1 160 aa11.78□□□□□ -0.52
LIG3-207ENST00000586119 PES1O00541 588 aaKnown RBP11.78□□□□□ -0.52
LIG3-207ENST00000586119 EFSO43281 561 aa11.78□□□□□ -0.52
LIG3-207ENST00000586119 GFPT2O94808 682 aa11.78□□□□□ -0.52
LIG3-207ENST00000586119 POP4O95707 220 aaKnown RBP11.78□□□□□ -0.52
LIG3-207ENST00000586119 UCHL3P15374 230 aa11.78□□□□□ -0.52
LIG3-207ENST00000586119 RHOQP17081 205 aa11.78□□□□□ -0.52
LIG3-207ENST00000586119 RBMS1P29558 406 aaKnown RBP11.78□□□□□ -0.52
LIG3-207ENST00000586119 EIF4A3P38919 411 aaKnown RBP11.78□□□□□ -0.52
LIG3-207ENST00000586119 SKOR1P84550 965 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms