RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ZFR2Q9UPR6 939 aaKnown RBP12.56□□□□□ -0.4
SS18-225ENST00000585121 WASF3Q9UPY6 502 aa12.56□□□□□ -0.4
SS18-225ENST00000585121 MSRB2Q9Y3D2 182 aa12.56□□□□□ -0.4
SS18-225ENST00000585121 HS3ST3A1Q9Y663 406 aa12.56□□□□□ -0.4
SS18-225ENST00000585121 MYO1FO00160 1098 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 RNF103O00237 685 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 DFFAO00273 331 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 PRAMEF11O60813 436 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 GYPCP04921 128 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 ERCC2P18074 760 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 EPHA8P29322 1005 aaPredicted RBP12.55□□□□□ -0.4
SS18-225ENST00000585121 PAPOLAP51003 745 aaKnown RBP12.55□□□□□ -0.4
SS18-225ENST00000585121 TMEM259Q4ZIN3 620 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 HS1BP3Q53T59 392 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 CFAP58Q5T655 872 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 SEL1L3Q68CR1 1132 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 UNQ6494/PRO21346Q6UXR6 183 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 RAB44Q7Z6P3 723 aaPredicted RBP12.55□□□□□ -0.4
SS18-225ENST00000585121 SPATS2Q86XZ4 545 aaKnown RBP12.55□□□□□ -0.4
SS18-225ENST00000585121 GATAD2AQ86YP4 633 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 PNPLA1Q8N8W4 532 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 TMEM145Q8NBT3 493 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 SAP25Q8TEE9 199 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 NUP85Q9BW27 656 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 CPEB1Q9BZB8 566 aaKnown RBP12.55□□□□□ -0.4
SS18-225ENST00000585121 KLC2Q9H0B6 622 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 THAP2Q9H0W7 228 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 DEF6Q9H4E7 631 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 SP110Q9HB58 689 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 FZD3Q9NPG1 666 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 ANAPC7Q9UJX3 599 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 CA5BQ9Y2D0 317 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 MFHAS1Q9Y4C4 1052 aa12.55□□□□□ -0.4
SS18-225ENST00000585121 NYNRINQ9P2P1 1898 aaKnown RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 A0A087X0T9 212 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 A6NNZ2 444 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 FPGTO14772 594 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 PALMO75781 387 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 LDOC1O95751 146 aaPredicted RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 PAK4O96013 591 aaPredicted RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 CYP1A2P05177 515 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 PROS1P07225 676 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 FAM228BP0C875 321 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 SSR1P43307 286 aaKnown RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 SUOXP51687 545 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 CYTH1Q15438 398 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 HADHQ16836 314 aaKnown RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 SPECC1LQ69YQ0 1117 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 PTAR1Q7Z6K3 402 aaPredicted RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 SLCO6A1Q86UG4 719 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 PAF1Q8N7H5 531 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 CXorf40AQ8TE69 158 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 HSPH1Q92598 858 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 CINPQ9BW66 212 aaPredicted RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 C1QTNF7Q9BXJ2 289 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 CALN1Q9BXU9 219 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 SLC39A8Q9C0K1 460 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 KLHL11Q9NVR0 708 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 CWC15Q9P013 229 aaKnown RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 DKK3Q9UBP4 350 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 IPO11Q9UI26 975 aaKnown RBP12.54□□□□□ -0.4
SS18-225ENST00000585121 KLK13Q9UKR3 277 aa12.54□□□□□ -0.4
SS18-225ENST00000585121 TMEM8BA6NDV4 472 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 IGLON5A6NGN9 336 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 J3KR12 359 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 ATXN1LP0C7T5 689 aaKnown RBP12.53□□□□□ -0.4
SS18-225ENST00000585121 ABL2P42684 1182 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 RABIFP47224 123 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 CLDN2P57739 230 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 ELP6Q0PNE2 266 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 BNIP3Q12983 259 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 RFTN1Q14699 578 aaPredicted RBP12.53□□□□□ -0.4
SS18-225ENST00000585121 SHBQ15464 509 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 DPYSL2Q16555 572 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 SMTNL2Q2TAL5 461 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 CCDC157Q569K6 752 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 EID2Q8N6I1 236 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 NIPA2Q8N8Q9 360 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 NETO2Q8NC67 525 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 OR13H1Q8NG92 308 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 OR8K1Q8NGG5 319 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 HCAR2Q8TDS4 363 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 TEKT4Q8WW24 435 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 ASB12Q8WXK4 309 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 CTNNBL1Q8WYA6 563 aaPredicted RBP12.53□□□□□ -0.4
SS18-225ENST00000585121 CNDP2Q96KP4 475 aaKnown RBP12.53□□□□□ -0.4
SS18-225ENST00000585121 LENG8Q96PV6 779 aaPredicted RBP12.53□□□□□ -0.4
SS18-225ENST00000585121 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.53□□□□□ -0.4
SS18-225ENST00000585121 LHX3Q9UBR4 397 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 LCMT1Q9UIC8 334 aa12.53□□□□□ -0.4
SS18-225ENST00000585121 PLXNA2O75051 1894 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 FAM221BA6H8Z2 402 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 ENC1O14682 589 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 H2AFZP0C0S5 128 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 CDK4P11802 303 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 IL1R2P27930 398 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 HNRNPH3P31942 346 aaKnown RBP12.52□□□□□ -0.4
SS18-225ENST00000585121 SERPINB6P35237 376 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 EIF4A3P38919 411 aaKnown RBP12.52□□□□□ -0.4
SS18-225ENST00000585121 CSNK1DP48730 415 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms