RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	FANCL	Q9NW38	375 aa		13.8	□□□□□ -0.2
SS18-222	ENST00000582792	TMEM51	Q9NW97	253 aa		13.8	□□□□□ -0.2
SS18-222	ENST00000582792	LIMA1	Q9UHB6	759 aa	Known RBP	13.8	□□□□□ -0.2
SS18-222	ENST00000582792	RP1	P56715	2156 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	PMS2P1	A4D2B8	440 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	MUSK	O15146	869 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	TSPAN6	O43657	245 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	SRGAP2	O75044	1071 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	TPM2	P07951	284 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	ABL2	P42684	1182 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	RPIA	P49247	311 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	DNA2	P51530	1060 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	RNASE9	P60153	205 aa	Known RBP	13.79	□□□□□ -0.2
SS18-222	ENST00000582792	ARF5	P84085	180 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	DRAP1	Q14919	205 aa	Predicted RBP	13.79	□□□□□ -0.2
SS18-222	ENST00000582792	EXOC3L4	Q17RC7	722 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	SLC25A52	Q3SY17	297 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	VWA3B	Q502W6	1294 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	KIAA1614	Q5VZ46	1190 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	PLPP6	Q8IY26	295 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	SLC35F3	Q8IY50	421 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	RBFA	Q8N0V3	343 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	WDR36	Q8NI36	951 aa	Known RBP	13.79	□□□□□ -0.2
SS18-222	ENST00000582792	WDR48	Q8TAF3	677 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	GLMN	Q92990	594 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	NAT6	Q93015	286 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	RAB7B	Q96AH8	199 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	HAPLN3	Q96S86	360 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	ANP32E	Q9BTT0	268 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	HSD3B7	Q9H2F3	369 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	CLMP	Q9H6B4	373 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	ZDHHC6	Q9H6R6	413 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	PLCB1	Q9NQ66	1216 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	SPAST	Q9UBP0	616 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	APOBEC3B	Q9UH17	382 aa	Known RBP	13.79	□□□□□ -0.2
SS18-222	ENST00000582792	AJAP1	Q9UKB5	411 aa	Predicted RBP	13.79	□□□□□ -0.2
SS18-222	ENST00000582792	FCF1	Q9Y324	198 aa	Known RBP	13.79	□□□□□ -0.2
SS18-222	ENST00000582792	UBR5	O95071	2799 aa	Predicted RBP	13.79	□□□□□ -0.2
SS18-222	ENST00000582792	NAV2	Q8IVL1	2488 aa		13.79	□□□□□ -0.2
SS18-222	ENST00000582792	CXorf51A	A0A1B0GTR3	108 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	GCAT	O75600	419 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	TNFSF15	O95150	251 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	CD160	O95971	181 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	PON1	P27169	355 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	CLCN1	P35523	988 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	SCNN1A	P37088	669 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	PDX1	P52945	283 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	TPM4	P67936	248 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	GNA12	Q03113	381 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	CLN3	Q13286	438 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	PTK2B	Q14289	1009 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	PRRT3	Q5FWE3	981 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	MIIP	Q5JXC2	388 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	C6orf132	Q5T0Z8	1188 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	FOXR1	Q6PIV2	292 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	CCDC81	Q6ZN84	652 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	SLC47A2	Q86VL8	602 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	ISG20	Q96AZ6	181 aa	Known RBP	13.78	□□□□□ -0.2
SS18-222	ENST00000582792	TBATA	Q96M53	351 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	TM6SF2	Q9BZW4	377 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	ZYG11B	Q9C0D3	744 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	TCEAL2	Q9H3H9	227 aa	Predicted RBP	13.78	□□□□□ -0.2
SS18-222	ENST00000582792	NDST4	Q9H3R1	872 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	TSPY26P	Q9H489	355 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	CBX8	Q9HC52	389 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	HECA	Q9UBI9	543 aa	Predicted RBP	13.78	□□□□□ -0.2
SS18-222	ENST00000582792	GGT7	Q9UJ14	662 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	ITM2B	Q9Y287	266 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	ACTL7A	Q9Y615	435 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	KIF26B	Q2KJY2	2108 aa		13.78	□□□□□ -0.2
SS18-222	ENST00000582792	CCDC187	A0A096LP49	1063 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	C16orf96	A6NNT2	1141 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	LMO7DN	F2Z398	122 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	PYCARD-AS1	I3L0S3	204 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	FOXN3	O00409	490 aa	Predicted RBP	13.77	□□□□□ -0.21
SS18-222	ENST00000582792	NEMP1	O14524	444 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	CASC3	O15234	703 aa	Known RBP	13.77	□□□□□ -0.21
SS18-222	ENST00000582792	ANXA6	P08133	673 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	ITGA2B	P08514	1039 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	GK	P32189	559 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	CDH5	P33151	784 aa	Predicted RBP	13.77	□□□□□ -0.21
SS18-222	ENST00000582792	GABRB2	P47870	512 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	THOP1	P52888	689 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	ADK	P55263	362 aa	Known RBP	13.77	□□□□□ -0.21
SS18-222	ENST00000582792	C1orf61	Q13536	156 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	SPIDR	Q14159	915 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	KRT31	Q15323	416 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	ARL13B	Q3SXY8	428 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	ZNF805	Q5CZA5	627 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	FAM102A	Q5T9C2	384 aa	Predicted RBP	13.77	□□□□□ -0.21
SS18-222	ENST00000582792	BNIPL	Q7Z465	357 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	CREBRF	Q8IUR6	639 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	DRC7	Q8IY82	874 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	PHACTR4	Q8IZ21	702 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	TMEM35B	Q8NCS4	154 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	CENPT	Q96BT3	561 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	COL12A1	Q99715	3063 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	CCDC3	Q9BQI4	270 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	LRRC61	Q9BV99	259 aa		13.77	□□□□□ -0.21
SS18-222	ENST00000582792	SIX2	Q9NPC8	291 aa		13.77	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms