RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 CYTH1Q15438 398 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 SEPT7Q16181 437 aaKnown RBP13.05□□□□□ -0.32
SNX1-211ENST00000560829 INO80DQ53TQ3 878 aaPredicted RBP13.05□□□□□ -0.32
SNX1-211ENST00000560829 FSCBQ5H9T9 825 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 SIRPB2Q5JXA9 342 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 STXBP5Q5T5C0 1151 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 PDE12Q6L8Q7 609 aaKnown RBP13.05□□□□□ -0.32
SNX1-211ENST00000560829 ESRP1Q6NXG1 681 aaKnown RBP13.05□□□□□ -0.32
SNX1-211ENST00000560829 STRA8Q7Z7C7 330 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 MICAL1Q8TDZ2 1067 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 ALG14Q96F25 216 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 SEC16BQ96JE7 1060 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 TRIB3Q96RU7 358 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 AGAP2Q99490 1192 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 PAIP2Q9BPZ3 127 aaKnown RBP13.05□□□□□ -0.32
SNX1-211ENST00000560829 FEM1AQ9BSK4 669 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 MAN1C1Q9NR34 630 aa13.05□□□□□ -0.32
SNX1-211ENST00000560829 MYO18AQ92614 2054 aaKnown RBP13.05□□□□□ -0.32
SNX1-211ENST00000560829 E2F8A0AVK6 867 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 TTC24A2A3L6 582 aaPredicted RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 CBX4O00257 560 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 TIMM44O43615 452 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 CLASP2O75122 1294 aaKnown RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 GJA1P17302 382 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 MPPE1Q53F39 396 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 TSTD2Q5T7W7 516 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 FYB2Q5VWT5 728 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 NLRP9Q7RTR0 991 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 KDELC2Q7Z4H8 507 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 SPRED2Q7Z698 418 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 BBS7Q8IWZ6 715 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 NDUFAF2Q8N183 169 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 CARNMT1Q8N4J0 409 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 SLC25A41Q8N5S1 370 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 DCAF4L2Q8NA75 395 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 TDRD5Q8NAT2 981 aaKnown RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 PEX13Q92968 403 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 FAM111AQ96PZ2 611 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 IQCGQ9H095 443 aaKnown RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 IARS2Q9NSE4 1012 aaKnown RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 HCFC1R1Q9NWW0 138 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 ARIH1Q9Y4X5 557 aaPredicted RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 ACTL7AQ9Y615 435 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 SHROOM3Q8TF72 1996 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 ANAPC1Q9H1A4 1944 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 MROH6A6NGR9 719 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 TPP1O14773 563 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 INSIG1O15503 277 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 SNX3O60493 162 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 RFPL2O75678 378 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 GJB3O75712 270 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 MZF1P28698 734 aaPredicted RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 HADHAP40939 763 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 RGRP47804 291 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 NSUN2Q08J23 767 aaKnown RBP eCLIP13.04□□□□□ -0.32
SNX1-211ENST00000560829 LAMB3Q13751 1172 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 CNGA3Q16281 694 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 UGP2Q16851 508 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 C6orf89Q6UWU4 347 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 CACNA2D3Q8IZS8 1091 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 LRRC8CQ8TDW0 803 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 GRAMD1AQ96CP6 724 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 IFT43Q96FT9 208 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 NUDCD1Q96RS6 583 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 C12orf65Q9H3J6 166 aaKnown RBP13.04□□□□□ -0.32
SNX1-211ENST00000560829 TASP1Q9H6P5 420 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 NOD2Q9HC29 1040 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 PCMTD2Q9NV79 361 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 FGFR1OP2Q9NVK5 253 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 SLC2A6Q9UGQ3 507 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 DPP7Q9UHL4 492 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 RIMKLBQ9ULI2 386 aa13.04□□□□□ -0.32
SNX1-211ENST00000560829 CHD5Q8TDI0 1954 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 CXorf51AA0A1B0GTR3 108 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 SCAMP3O14828 347 aaKnown RBP13.03□□□□□ -0.32
SNX1-211ENST00000560829 XYLBO75191 536 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 VAPBO95292 243 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 NDST3O95803 873 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 RHOP08100 348 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 MYOGP15173 224 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 EPCAMP16422 314 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 SERPINB8P50452 374 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 CSRP3P50461 194 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 PDE1BQ01064 536 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 ACVR1Q04771 509 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 CDH18Q13634 790 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 ITIH4Q14624 930 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 INSCQ1MX18 579 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 RALGPS1Q5JS13 557 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 GPR158Q5T848 1215 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 FSTL4Q6MZW2 842 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 KYAT3Q6YP21 454 aaKnown RBP13.03□□□□□ -0.32
SNX1-211ENST00000560829 MICALCLQ6ZW33 695 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 MFN1Q8IWA4 741 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 CMTM8Q8IZV2 173 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 DCLK2Q8N568 766 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 WFDC5Q8TCV5 224 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 ZNF75CPQ92670 426 aaPredicted RBP13.03□□□□□ -0.32
SNX1-211ENST00000560829 SLC13A1Q9BZW2 595 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 RHOJQ9H4E5 214 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms