RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 HBS1LQ9Y450 684 aaKnown RBP18.04■□□□□ 0.48
SNX1-208ENST00000559844 USH1CQ9Y6N9 552 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 SPTBN5Q9NRC6 3674 aaKnown RBP18.03■□□□□ 0.48
SNX1-208ENST00000559844 COL6A3P12111 3177 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 KLF11O14901 512 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 TBX18O95935 607 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 SCTRP47872 440 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 RENBPP51606 427 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 HNRNPDQ14103 355 aaKnown RBP18.03■□□□□ 0.48
SNX1-208ENST00000559844 CERCAMQ5T4B2 595 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 ARMC3Q5W041 872 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 NECTIN4Q96NY8 510 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 SLC13A1Q9BZW2 595 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 C12orf65Q9H3J6 166 aaKnown RBP18.03■□□□□ 0.48
SNX1-208ENST00000559844 POMKQ9H5K3 350 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 UBP1Q9NZI7 540 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 CAPN7Q9Y6W3 813 aa18.03■□□□□ 0.48
SNX1-208ENST00000559844 NUP210Q8TEM1 1887 aaPredicted RBP18.03■□□□□ 0.48
SNX1-208ENST00000559844 SHROOM3Q8TF72 1996 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 ZCWPW2A0A1B0GU75 182 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 GRXCR2A6NFK2 248 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 COCHO43405 550 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 IL1BP01584 269 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 ITGA2BP08514 1039 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 ERVK-10P10266 1014 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 CCDC15Q0P6D6 951 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 SMAD4Q13485 552 aaKnown RBP18.02■□□□□ 0.48
SNX1-208ENST00000559844 DBN1Q16643 649 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 RAP1GAP2Q684P5 730 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 CES3Q6UWW8 571 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 CDHR3Q6ZTQ4 885 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 OTOAQ7RTW8 1153 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 ZNF398Q8TD17 642 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 NSMCE1Q8WV22 266 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 SUSD6Q92537 303 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 ATP2A3Q93084 1043 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 SLC22A12Q96S37 553 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 CYP2S1Q96SQ9 504 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 APOL2Q9BQE5 337 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 KIFC1Q9BW19 673 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 NOL6Q9H6R4 1146 aaKnown RBP18.02■□□□□ 0.48
SNX1-208ENST00000559844 ABCF3Q9NUQ8 709 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 NSMCE4AQ9NXX6 385 aa18.02■□□□□ 0.48
SNX1-208ENST00000559844 MYO18AQ92614 2054 aaKnown RBP18.02■□□□□ 0.48
SNX1-208ENST00000559844 H0YHG0 523 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 GLRA3O75311 464 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 HLA-DQB2P05538 268 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 HDCP19113 662 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 ALDH3A1P30838 453 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 SPRP35270 261 aaPredicted RBP18.02■□□□□ 0.47
SNX1-208ENST00000559844 PDE1BQ01064 536 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 MPP3Q13368 585 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 PCID2Q5JVF3 399 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 FBXL22Q6P050 247 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 KYAT3Q6YP21 454 aaKnown RBP18.02■□□□□ 0.47
SNX1-208ENST00000559844 ARL14EPQ8N8R7 260 aaPredicted RBP18.02■□□□□ 0.47
SNX1-208ENST00000559844 RAB3IL1Q8TBN0 382 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 PTCD2Q8WV60 388 aaKnown RBP18.02■□□□□ 0.47
SNX1-208ENST00000559844 FGF13Q92913 245 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 TSSK1BQ9BXA7 367 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 SLC46A2Q9BY10 475 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 RNF38Q9H0F5 515 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 TASP1Q9H6P5 420 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 PRDM6Q9NQX0 595 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 SLC12A4Q9UP95 1085 aa18.02■□□□□ 0.47
SNX1-208ENST00000559844 TRAV19A0A0A6YYK7 116 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 MBTPS2O43462 519 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 CKMP06732 381 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 HMBSP08397 361 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 DDX6P26196 483 aaKnown RBP eCLIP18.01■□□□□ 0.47
SNX1-208ENST00000559844 ATP5C1P36542 298 aaKnown RBP18.01■□□□□ 0.47
SNX1-208ENST00000559844 MAPKAPK2P49137 400 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 CSE1LP55060 971 aaKnown RBP18.01■□□□□ 0.47
SNX1-208ENST00000559844 TFAP2DQ7Z6R9 452 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 NPAS3Q8IXF0 933 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 IPMKQ8NFU5 416 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 SPATA22Q8NHS9 363 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 RPRD1AQ96P16 312 aaPredicted RBP18.01■□□□□ 0.47
SNX1-208ENST00000559844 FICDQ9BVA6 458 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 RETREG1Q9H6L5 497 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 SP110Q9HB58 689 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 DCDC2Q9UHG0 476 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 DNMT3LQ9UJW3 386 aa18.01■□□□□ 0.47
SNX1-208ENST00000559844 TPP1O14773 563 aa18■□□□□ 0.47
SNX1-208ENST00000559844 BIRC5O15392 142 aa18■□□□□ 0.47
SNX1-208ENST00000559844 DCTN3O75935 186 aa18■□□□□ 0.47
SNX1-208ENST00000559844 DNAJC8O75937 253 aaPredicted RBP18■□□□□ 0.47
SNX1-208ENST00000559844 TPH1P17752 444 aa18■□□□□ 0.47
SNX1-208ENST00000559844 YBEYP58557 167 aaPredicted RBP18■□□□□ 0.47
SNX1-208ENST00000559844 SETDB1Q15047 1291 aa18■□□□□ 0.47
SNX1-208ENST00000559844 PARP15Q460N3 678 aa18■□□□□ 0.47
SNX1-208ENST00000559844 ALFQ53S48 1182 aa18■□□□□ 0.47
SNX1-208ENST00000559844 TEDDM1Q5T9Z0 273 aa18■□□□□ 0.47
SNX1-208ENST00000559844 ATG16L1Q676U5 607 aa18■□□□□ 0.47
SNX1-208ENST00000559844 PDPK2PQ6A1A2 396 aa18■□□□□ 0.47
SNX1-208ENST00000559844 POTEHQ6S545 545 aa18■□□□□ 0.47
SNX1-208ENST00000559844 KCNMB4Q86W47 210 aa18■□□□□ 0.47
SNX1-208ENST00000559844 PPHLN1Q8NEY8 458 aaKnown RBP18■□□□□ 0.47
SNX1-208ENST00000559844 IGSF8Q969P0 613 aa18■□□□□ 0.47
SNX1-208ENST00000559844 HMCESQ96FZ2 354 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms