RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 KLHL8Q9P2G9 620 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-227ENST00000557269 SERGEFQ9UGK8 458 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 CDC23Q9UJX2 597 aa12.98□□□□□ -0.33
SHMT2-227ENST00000557269 ALOX15BO15296 676 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 MID1O15344 667 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 LAMTOR5O43504 91 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 PHF2O75151 1096 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 GCATO75600 419 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 NEBLO76041 1014 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 METTL18O95568 372 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 SLC8A1P32418 973 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 CD86P42081 329 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 PAFAH1B1P43034 410 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 SKOR1P84550 965 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 CSTF1Q05048 431 aaKnown RBP12.97□□□□□ -0.33
SHMT2-227ENST00000557269 CST6Q15828 149 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 ZNF776Q68DI1 518 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-227ENST00000557269 KIAA1324Q6UXG2 1013 aaKnown RBP12.97□□□□□ -0.33
SHMT2-227ENST00000557269 GDPD4Q6W3E5 623 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 ZSWIM9Q86XI8 627 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 PGBD3Q8N328 593 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 CAMKK1Q8N5S9 505 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 AADATQ8N5Z0 425 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 FRMD1Q8N878 549 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 TMIEQ8NEW7 156 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 TADA1Q96BN2 335 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 IMP4Q96G21 291 aaKnown RBP12.97□□□□□ -0.33
SHMT2-227ENST00000557269 CCDC114Q96M63 670 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 SPATA13Q96N96 652 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 KLHL32Q96NJ5 620 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 RBM15Q96T37 977 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHMT2-227ENST00000557269 VAT1Q99536 393 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 CPEB1Q9BZB8 566 aaKnown RBP12.97□□□□□ -0.33
SHMT2-227ENST00000557269 TPSD1Q9BZJ3 242 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 DDX47Q9H0S4 455 aaKnown RBP12.97□□□□□ -0.33
SHMT2-227ENST00000557269 HOMER3Q9NSC5 361 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 UBP1Q9NZI7 540 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 RNF14Q9UBS8 474 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 AMACRQ9UHK6 382 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 TRHDEQ9UKU6 1024 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 PCDHGC4Q9Y5F7 938 aa12.97□□□□□ -0.33
SHMT2-227ENST00000557269 ZDBF2Q9HCK1 2354 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 CFAP69A5D8W1 941 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 KPNA3O00505 521 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 TRAFD1O14545 582 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 MT-CYBP00156 380 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 IFNB1P01574 187 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 UGT2B4P06133 528 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 PSMB4P28070 264 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 STIP1P31948 543 aaKnown RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 RPL22P35268 128 aaKnown RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 DRD3P35462 400 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 FNTBP49356 437 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 AP1S1P61966 158 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 C2orf54Q08AI8 447 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 TRAF2Q12933 501 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 CCDC137Q6PK04 289 aaKnown RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 KLHL7Q8IXQ5 586 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 SPATA4Q8NEY3 305 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 ATL2Q8NHH9 583 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 RLN3Q8WXF3 142 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 PRCCQ92733 491 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 SIPA1Q96FS4 1042 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 OXNAD1Q96HP4 312 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 TUBGCP5Q96RT8 1024 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 MLPHQ9BV36 600 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 SLC25A51Q9H1U9 297 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 GBA3Q9H227 469 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 PABPC3Q9H361 631 aaKnown RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 FBRSQ9HAH7 460 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 BCCIPQ9P287 314 aaKnown RBP eCLIP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 RSPH14Q9UHP6 348 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 INVSQ9Y283 1065 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 NEU2Q9Y3R4 380 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 FARP1Q9Y4F1 1045 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-227ENST00000557269 MRFAP1Q9Y605 127 aa12.96□□□□□ -0.33
SHMT2-227ENST00000557269 CACNA1IQ9P0X4 2223 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 GOLGA6L10A0A0M3HER8 536 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 A0A1W2PP55 124 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 OPHN1O60890 802 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 RNASEH1O60930 286 aaKnown RBP12.95□□□□□ -0.34
SHMT2-227ENST00000557269 ALDH1A2O94788 518 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 STK10O94804 968 aaKnown RBP12.95□□□□□ -0.34
SHMT2-227ENST00000557269 PRNPP04156 253 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 PDHA1P08559 390 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 ITIH2P19823 946 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 C5AR1P21730 350 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 HOXA6P31267 233 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 PTGIRP43119 386 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 TPMTP51580 245 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 MRPS25P82663 173 aaKnown RBP12.95□□□□□ -0.34
SHMT2-227ENST00000557269 CNTN1Q12860 1018 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 PTPRRQ15256 657 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 TRIP13Q15645 432 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-227ENST00000557269 P3H1Q32P28 736 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 ZNF805Q5CZA5 627 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 RALGPS1Q5JS13 557 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 LRRC73Q5JTD7 316 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 FAXCQ5TGI0 409 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 ZNF572Q7Z3I7 529 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms