RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 HGFP14210 728 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 CMA1P23946 247 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 SYKP43405 635 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 ACADSBP45954 432 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 NDUFA8P51970 172 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 ADKP55263 362 aaKnown RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 YWHAZP63104 245 aaKnown RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 RPS21P63220 83 aaKnown RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 AUHQ13825 339 aaKnown RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 LBRQ14739 615 aaKnown RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 TAF5Q15542 800 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 ATL3Q6DD88 541 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 RAB11FIP2Q7L804 512 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 B3GNT8Q7Z7M8 397 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 C14orf80Q86SX3 495 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 FBXO39Q8N4B4 442 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 WDR48Q8TAF3 677 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 NAT6Q93015 286 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 SLC35C1Q96A29 364 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 LIN37Q96GY3 246 aaPredicted RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 NT5C1BQ96P26 610 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 KLF6Q99612 283 aaPredicted RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 BOCQ9BWV1 1114 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 HDAC8Q9BY41 377 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 EPB41L5Q9HCM4 733 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 RAB6BQ9NRW1 208 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 DDIT4Q9NX09 232 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 IL36AQ9UHA7 158 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 VPS51Q9UID3 782 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 GDF2Q9UK05 429 aaPredicted RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 CFAP45Q9UL16 551 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 MKL2Q9ULH7 1088 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 PCDHGA7Q9Y5G6 932 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 HRH3Q9Y5N1 445 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 HS3ST4Q9Y661 456 aa10.7□□□□□ -0.7
VPS29-208ENST00000550267 UBR5O95071 2799 aaPredicted RBP10.7□□□□□ -0.7
VPS29-208ENST00000550267 SHISA8B8ZZ34 492 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 FPGTO14772 594 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 SLC16A3O15427 465 aaKnown RBP10.69□□□□□ -0.7
VPS29-208ENST00000550267 CLDN11O75508 207 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 GCATO75600 419 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 LEFTY1O75610 366 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 CNTN5O94779 1100 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 ENDOD1O94919 500 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 IL2RAP01589 272 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 NTRK1P04629 796 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 RHOCP08134 193 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 ADRB3P13945 408 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 CCR1P32246 355 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 UGT1A5P35504 534 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 NEK3P51956 506 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 KRT83P78385 493 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 TLE1Q04724 770 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 PRRT3Q5FWE3 981 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 KIAA1161Q6NSJ0 714 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 C22orf39Q6P5X5 142 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 LINGO4Q6UY18 593 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 RRAGAQ7L523 313 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 ARHGEF19Q8IW93 802 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 DEFB106AQ8N104 65 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 BTN2A2Q8WVV5 523 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 GLMNQ92990 594 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 PPP1R16AQ96I34 528 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 FEM1CQ96JP0 617 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 PPP1R13BQ96KQ4 1090 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 THAP9Q9H5L6 903 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 SPASTQ9UBP0 616 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 APOBEC3BQ9UH17 382 aaKnown RBP10.69□□□□□ -0.7
VPS29-208ENST00000550267 PNMA8BQ9ULN7 279 aaPredicted RBP10.69□□□□□ -0.7
VPS29-208ENST00000550267 TBC1D30Q9Y2I9 924 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 FADS3Q9Y5Q0 445 aa10.69□□□□□ -0.7
VPS29-208ENST00000550267 BSNQ9UPA5 3926 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 ANXA6P08133 673 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 LIPCP11150 499 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 SLC2A3P11169 496 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 SFTPCP11686 197 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 WT1P19544 449 aaPredicted RBP10.68□□□□□ -0.7
VPS29-208ENST00000550267 FMO5P49326 533 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 PMS1P54277 932 aaKnown RBP10.68□□□□□ -0.7
VPS29-208ENST00000550267 CDH4P55283 916 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 PFN3P60673 137 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 CYP4F2P78329 520 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 CDK17Q00537 523 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 PKP1Q13835 747 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 UBAP2LQ14157 1087 aaKnown RBP10.68□□□□□ -0.7
VPS29-208ENST00000550267 TBR1Q16650 682 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 ALFQ53S48 1182 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 ANKRD40Q6AI12 368 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 KRBA2Q6ZNG9 492 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 DPY19L3Q6ZPD9 716 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 C1orf229Q6ZS94 237 aaPredicted RBP10.68□□□□□ -0.7
VPS29-208ENST00000550267 PARS2Q7L3T8 475 aaKnown RBP10.68□□□□□ -0.7
VPS29-208ENST00000550267 TMEM110Q86TL2 294 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 VASH2Q86V25 355 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 PHACTR4Q8IZ21 702 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 STK32AQ8WU08 396 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 LENG8Q96PV6 779 aaPredicted RBP10.68□□□□□ -0.7
VPS29-208ENST00000550267 MED15Q96RN5 788 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 SEMA3CQ99985 751 aa10.68□□□□□ -0.7
VPS29-208ENST00000550267 LRRC61Q9BV99 259 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms