RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SEPT3Q9UH03 358 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 GGT7Q9UJ14 662 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 CNTN6Q9UQ52 1028 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 ITM2BQ9Y287 266 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 COL12A1Q99715 3063 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 BOD1L1Q8NFC6 3051 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 A0A1W2PQM1 296 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 TMX2-CTNND1H3BSU7 103 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 I6L893 689 aaPredicted RBP12.96□□□□□ -0.33
SCAF11-208ENST00000546534 AGRPO00253 132 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 MED7O43513 233 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 TSPAN6O43657 245 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ADCY5O95622 1261 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 RPLP0P05388 317 aaKnown RBP12.96□□□□□ -0.33
SCAF11-208ENST00000546534 GLI1P08151 1106 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 JMJD7P0C870 316 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 KRT5P13647 590 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ITIH1P19827 911 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ABL2P42684 1182 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 CCNHP51946 323 aaPredicted RBP12.96□□□□□ -0.33
SCAF11-208ENST00000546534 PDCLQ13371 301 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 PTK2BQ14289 1009 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 MANEAQ5SRI9 462 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 TFAP2DQ7Z6R9 452 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 SETD3Q86TU7 594 aaPredicted RBP12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ZFAND4Q86XD8 727 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ZNF683Q8IZ20 524 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 SDR16C5Q8N3Y7 309 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 KYQ8NBH2 561 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 EHBP1Q8NDI1 1231 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ZNF606Q8WXB4 792 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 CENPTQ96BT3 561 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 FUCA2Q9BTY2 467 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 CPEB1Q9BZB8 566 aaKnown RBP12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ACP6Q9NPH0 428 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 ANLNQ9NQW6 1124 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 GEMIN8Q9NWZ8 242 aaKnown RBP12.96□□□□□ -0.33
SCAF11-208ENST00000546534 MPP6Q9NZW5 540 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 SEPT10Q9P0V9 454 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 SIRPGQ9P1W8 387 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 SNX10Q9Y5X0 201 aa12.96□□□□□ -0.33
SCAF11-208ENST00000546534 FLNCQ14315 2725 aa12.96□□□□□ -0.34
SCAF11-208ENST00000546534 PRAMEF33A0A0G2JMD5 474 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 DRGXA6NNA5 263 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 C16orf96A6NNT2 1141 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 NEMP1O14524 444 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 THAP12O43422 761 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 PRAMEF10O60809 474 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 HSF2BPO75031 334 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 ZMPSTE24O75844 475 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 ZNF202O95125 648 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 CCKBRP32239 447 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 IGFALSP35858 605 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 SERPINH1P50454 418 aaKnown RBP12.95□□□□□ -0.34
SCAF11-208ENST00000546534 PPARDQ03181 441 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 LRRC63Q05C16 580 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 CETN1Q12798 172 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 PNOCQ13519 176 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 COBLL1Q53SF7 1204 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 CARD16Q5EG05 197 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 EFHC1Q5JVL4 640 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 VPS36Q86VN1 386 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 PCDH20Q8N6Y1 951 aaKnown RBP12.95□□□□□ -0.34
SCAF11-208ENST00000546534 ARL10Q8N8L6 244 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 ZSCAN1Q8NBB4 408 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 PCDH19Q8TAB3 1148 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 TMEM74Q96NL1 305 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 CPXM1Q96SM3 734 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 SPON2Q9BUD6 331 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 CEP44Q9C0F1 390 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 ZDHHC6Q9H6R6 413 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 PIGVQ9NUD9 493 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 ASNSD1Q9NWL6 643 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 FOXJ2Q9P0K8 574 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 DOLKQ9UPQ8 538 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 FCF1Q9Y324 198 aaKnown RBP12.95□□□□□ -0.34
SCAF11-208ENST00000546534 LOXL2Q9Y4K0 774 aa12.95□□□□□ -0.34
SCAF11-208ENST00000546534 M0QYT0 321 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 P4HA2O15460 535 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 TFE3P19532 575 aaPredicted RBP12.94□□□□□ -0.34
SCAF11-208ENST00000546534 OR1E1P30953 314 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 GKP32189 559 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 NOS2P35228 1153 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 EIF4A3P38919 411 aaKnown RBP12.94□□□□□ -0.34
SCAF11-208ENST00000546534 ETV5P41161 510 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 YPEL5P62699 121 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 SLC20A2Q08357 652 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 MORC3Q14149 939 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 TCEA2Q15560 299 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 ZNF658Q5TYW1 1059 aaPredicted RBP12.94□□□□□ -0.34
SCAF11-208ENST00000546534 OTUD1Q5VV17 481 aaPredicted RBP12.94□□□□□ -0.34
SCAF11-208ENST00000546534 RETSATQ6NUM9 610 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 MACC1Q6ZN28 852 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 DTX1Q86Y01 620 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 PTRH1Q86Y79 214 aaKnown RBP12.94□□□□□ -0.34
SCAF11-208ENST00000546534 WDTC1Q8N5D0 677 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 ANKK1Q8NFD2 765 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 SCG3Q8WXD2 468 aaKnown RBP12.94□□□□□ -0.34
SCAF11-208ENST00000546534 RAB7BQ96AH8 199 aa12.94□□□□□ -0.34
SCAF11-208ENST00000546534 GTPBP4Q9BZE4 634 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms