RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 STARD3Q14849 445 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ACCSLQ4AC99 568 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 NCEH1Q6PIU2 408 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 NAT8LQ8N9F0 302 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 CPT1BQ92523 772 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ART4Q93070 314 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 RHOXF2Q9BQY4 288 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 FSD1LQ9BXM9 530 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 CEP41Q9BYV8 373 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ANKZF1Q9H8Y5 726 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ARNT2Q9HBZ2 717 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 SLCO3A1Q9UIG8 710 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ANAPC5Q9UJX4 755 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 KANSL1LA0AUZ9 987 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 CHURC1-FNTBB4DL54 471 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 MUSKO15146 869 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 ATG13O75143 517 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 LMAN1P49257 510 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 VPS41P49754 854 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 SCNN1BP51168 640 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 CCNHP51946 323 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 SKOR1P84550 965 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 MESP2Q0VG99 397 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 TRIP13Q15645 432 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 ERCC6LQ2NKX8 1250 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 MYLK3Q32MK0 819 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 EOGTQ5NDL2 527 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 KDELC1Q6UW63 502 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 B4GALNT4Q76KP1 1039 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 PRPF39Q86UA1 669 aaKnown RBP16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 CHPFQ8IZ52 775 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 NDUFAF2Q8N183 169 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 ZCCHC9Q8N567 271 aaKnown RBP16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 TMIEQ8NEW7 156 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 OR2A12Q8NGT7 310 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 CYB5D2Q8WUJ1 264 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 LRRN4Q8WUT4 740 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 OR8D1Q8WZ84 308 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 PTPRN2Q92932 1015 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 LRRC39Q96DD0 335 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 C19orf43Q9BQ61 176 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 HEPHQ9BQS7 1158 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 TDRD1Q9BXT4 1180 aaKnown RBP16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 ADGRE3Q9BY15 652 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 GRHL1Q9NZI5 618 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 HECAQ9UBI9 543 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 RAB21Q9UL25 225 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 SNX24Q9Y343 169 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 TTC28Q96AY4 2481 aa16.2■□□□□ 0.18
PRPF40A-212ENST00000545856 LOC285095A0A1B0GVY8 99 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 K7ERQ8 282 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 HTRA2O43464 458 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 FGF1P05230 155 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 MMP2P08253 660 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 CHRM1P11229 460 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 CD86P42081 329 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 ITGA8P53708 1063 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 POLR2LP62875 67 aaKnown RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 SLC7A5Q01650 507 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 DSC2Q02487 901 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 CDK18Q07002 472 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 BCL2L1Q07817 233 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 CCDC15Q0P6D6 951 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 CDH17Q12864 832 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 SFSWAPQ12872 951 aaKnown RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 CAMK2GQ13555 558 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 LAMB3Q13751 1172 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 MAP9Q49MG5 647 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 EGFLAMQ63HQ2 1017 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 LRRC8BQ6P9F7 803 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 BRAT1Q6PJG6 821 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 PDIK1LQ8N165 341 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 PRCCQ92733 491 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 OXNAD1Q96HP4 312 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 PPP1R16AQ96I34 528 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 NOD2Q9HC29 1040 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 FBRSL1Q9HCM7 1045 aaKnown RBP16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 LTB4R2Q9NPC1 389 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 DKK3Q9UBP4 350 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 SCML1Q9UN30 329 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 STON1Q9Y6Q2 735 aa16.19■□□□□ 0.18
PRPF40A-212ENST00000545856 TSPAN11A1L157 253 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 SHISA7A6NL88 538 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 C1QTNF3-AMACRE9PGA6 284 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 RNASEH1O60930 286 aaKnown RBP16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 NDST3O95803 873 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 EGFP01133 1207 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 ALADP13716 330 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 ADRA1AP35348 466 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 IL12RB1P42701 662 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 NRLP54845 237 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 ARL4CP56559 192 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 WNT3AP56704 352 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 MAXP61244 160 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 ZBTB16Q05516 673 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 NIPAL4Q0D2K0 466 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 FAM46CQ5VWP2 391 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 RANBP10Q6VN20 620 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 LEKR1Q6ZMV7 388 aa16.18■□□□□ 0.18
PRPF40A-212ENST00000545856 DPY19L3Q6ZPD9 716 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms