RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CLEC4MQ9H2X3 399 aaPredicted RBP17.77■□□□□ 0.44
NPHP4-209ENST00000489180 RAP2CQ9Y3L5 183 aa17.77■□□□□ 0.44
NPHP4-209ENST00000489180 FAM155BO75949 473 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 DBTP11182 482 aaKnown RBP17.77■□□□□ 0.43
NPHP4-209ENST00000489180 ZNF540Q8NDQ6 660 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 ZNF398Q8TD17 642 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 WDR60Q8WVS4 1066 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 PCDHB18PQ96TA0 734 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 GLIS2Q9BZE0 524 aaPredicted RBP17.77■□□□□ 0.43
NPHP4-209ENST00000489180 EPB41L4BQ9H329 900 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 ASB8Q9H765 288 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 SPG21Q9NZD8 308 aa17.77■□□□□ 0.43
NPHP4-209ENST00000489180 TMA7Q9Y2S6 64 aaKnown RBP17.77■□□□□ 0.43
NPHP4-209ENST00000489180 TNPO3Q9Y5L0 923 aaKnown RBP17.77■□□□□ 0.43
NPHP4-209ENST00000489180 EDF1O60869 148 aaKnown RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 TNFRSF21O75509 655 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 DGKZQ13574 1117 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ARMC3Q5W041 872 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 OFCC1Q8IZS5 231 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 GRIN3AQ8TCU5 1115 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ACO2Q99798 780 aaKnown RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 FANCEQ9HB96 536 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ETAA1Q9NY74 926 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 PSMD11O00231 422 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 CLDN5O00501 218 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 KPNA3O00505 521 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 FGF10O15520 208 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 RECQL5O94762 991 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 USP46P62068 366 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ACVR2BQ13705 512 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 BBS12Q6ZW61 710 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 TRAPPC5Q8IUR0 188 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 GBA2Q9HCG7 927 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 LEF1Q9UJU2 399 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 AP4B1Q9Y6B7 739 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 B4GALT5O43286 388 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 DDNO94850 711 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ZBTB11O95625 1053 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 PTPN3P26045 913 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 IRF8Q02556 426 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 FSTL1Q12841 308 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 CDC73Q6P1J9 531 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 SH3BP5LQ7L8J4 393 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 PCDH12Q9NPG4 1184 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 TAF4O00268 1085 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 TGFB1I1O43294 461 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 AHCYL1O43865 530 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 GRIN3BO60391 1043 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ACADMP11310 421 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ADSSP30520 456 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 PIK3CGP48736 1102 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 GALNT3Q14435 633 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 MAPKAPK3Q16644 382 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 GSTA3Q16772 222 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 LIPMQ5VYY2 423 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 PSMA8Q8TAA3 256 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 PTCD3Q96EY7 689 aaKnown RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 RHBGQ9H310 441 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 HDAC3O15379 428 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 PQBP1O60828 265 aaKnown RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 CYP2A6P11509 494 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 GTF2E2P29084 291 aaKnown RBP17.76■□□□□ 0.43
NPHP4-209ENST00000489180 TCEA2Q15560 299 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 POM121L1PQ3SYA9 428 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 JOSD2Q8TAC2 188 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 ELMO1Q92556 727 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 CDH19Q9H159 772 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 CDT1Q9H211 546 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 SLC12A4Q9UP95 1085 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 TRPV2Q9Y5S1 764 aa17.76■□□□□ 0.43
NPHP4-209ENST00000489180 DDX3YO15523 660 aaKnown RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 PDE9AO76083 593 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 CST1P01037 141 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 SP100P23497 879 aaPredicted RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 CLCN5P51795 746 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 NR1H2P55055 460 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 SGCGQ13326 291 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 SETMARQ53H47 684 aaPredicted RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 CDH24Q86UP0 819 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 UNC93AQ86WB7 457 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 CROCCP3Q8IVE0 287 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 NKAPQ8N5F7 415 aaKnown RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 ADAM2Q99965 735 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 MRPL57Q9BQC6 102 aaKnown RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 ALOX15BO15296 676 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 OR6B1O95007 311 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 NUDT14O95848 222 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 ANXA5P08758 320 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 PTPRAP18433 802 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 KLRC2P26717 231 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 RPL5P46777 297 aaKnown RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 HIRAP54198 1017 aaPredicted RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 ITGA1P56199 1179 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 CELF3Q5SZQ8 465 aaKnown RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 STK40Q8N2I9 435 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 TMEM86AQ8N2M4 240 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 LENG9Q96B70 501 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 C12orf65Q9H3J6 166 aaKnown RBP17.75■□□□□ 0.43
NPHP4-209ENST00000489180 IKZF3Q9UKT9 509 aa17.75■□□□□ 0.43
NPHP4-209ENST00000489180 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms