RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 UBA3Q8TBC4 463 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 OSCP1Q8WVF1 389 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SNX19Q92543 992 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TMEM143Q96AN5 459 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SH3YL1Q96HL8 342 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SLC39A3Q9BRY0 314 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CHID1Q9BWS9 393 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TDRD1Q9BXT4 1180 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 YTHDF1Q9BYJ9 559 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ADAMTS10Q9H324 1103 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TP63Q9H3D4 680 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 LRRC40Q9H9A6 602 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 IARS2Q9NSE4 1012 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CACNA2D2Q9NY47 1150 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MOCS1Q9NZB8 636 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TBC1D14Q9P2M4 693 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ZDHHC2Q9UIJ5 367 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TRAF6Q9Y4K3 522 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PCDHGA7Q9Y5G6 932 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SPO11Q9Y5K1 396 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PRORSD1PA6NEY8 169 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TCAF2A6NFQ2 919 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 DDTLA6NHG4 134 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 FAM155AB1AL88 458 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TMEM233B4DJY2 109 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 GPR25O00155 361 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TNFRSF10AO00220 468 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 GNGT2O14610 69 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MSI1O43347 362 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 GUCY1B2O75343 617 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CCNKO75909 580 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CABYRO75952 493 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TRIM16O95361 564 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 C1QAP02745 245 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MT-ND1P03886 318 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 BMP2P12643 396 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 HDCP19113 662 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ATP6V1B2P21281 511 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MZF1P28698 734 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CRKP46108 304 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 KRT6CP48668 564 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 GTF2A2P52657 109 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SMUG1Q53HV7 270 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 INTS11Q5TA45 600 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MAMDC4Q6UXC1 1216 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ZYG11AQ6WRX3 759 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CCDC81Q6ZN84 652 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ITIH5Q86UX2 942 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 C11orf74Q86VG3 221 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 XYLT1Q86Y38 959 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 COLGALT2Q8IYK4 626 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CPSF7Q8N684 471 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MFSD2AQ8NA29 543 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ANKRD52Q8NB46 1076 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SLC4A11Q8NBS3 891 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 IL31RAQ8NI17 732 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 USP33Q8TEY7 942 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TMEM174Q8WUU8 243 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 HDAC11Q96DB2 347 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF486Q96H40 463 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 DEPDC7Q96QD5 511 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 RMDN3Q96TC7 470 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 RBBP8Q99708 897 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 VRTNQ9H8Y1 702 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CYP4F12Q9HCS2 524 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 OXSMQ9NWU1 459 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MOSPD1Q9UJG1 213 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PCDHA10Q9Y5I2 948 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 UBR3Q6ZT12 1888 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TCRBV3S1A0A5B6 114 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 H0Y626 953 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 M0QX08 132 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 LYPLA2O95372 231 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 GSRP00390 522 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ASS1P00966 412 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MAGP20916 626 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 NAMPTP43490 491 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SEPHS1P49903 392 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF143P52747 638 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 LIMK2P53671 638 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 NIPAL4Q0D2K0 466 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TUBA3CQ13748 450 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 AASDHQ4L235 1098 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ARHGEF16Q5VV41 709 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SWSAP1Q6NVH7 229 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PID1Q7Z2X4 250 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 IQCF2Q8IXL9 164 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 C8orf59Q8N0T1 100 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ARFGAP1Q8N6T3 406 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 NAT16Q8N8M0 369 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 RDH11Q8TC12 318 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 KCTD4Q8WVF5 259 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 HTR3CQ8WXA8 447 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 HDAC10Q969S8 669 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 CLIP3Q96DZ5 547 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SLC10A4Q96EP9 437 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 FAR2Q96K12 515 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PEBP4Q96S96 227 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 NANOGQ9H9S0 305 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms