RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 IFT43Q96FT9 208 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 ZNF419Q96HQ0 510 aaPredicted RBP10.29□□□□□ -0.76
USP39-215ENST00000481409 ZNF641Q96N77 438 aaPredicted RBP10.29□□□□□ -0.76
USP39-215ENST00000481409 TBL1YQ9BQ87 522 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 RPP25Q9BUL9 199 aaKnown RBP10.29□□□□□ -0.76
USP39-215ENST00000481409 OSBPL1AQ9BXW6 950 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 CEP41Q9BYV8 373 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 TXLNGYQ9BZA5 131 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 CIPCQ9C0C6 399 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 IL22Q9GZX6 179 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 ATP13A3Q9H7F0 1226 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 PPCSQ9HAB8 311 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 FBRSQ9HAH7 460 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 LHX3Q9UBR4 397 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 LIMD1Q9UGP4 676 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 SUN2Q9UH99 717 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 TTLL3Q9Y4R7 772 aa10.29□□□□□ -0.76
USP39-215ENST00000481409 BRWD1Q9NSI6 2320 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 COL4A2P08572 1712 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 EDDM13A0A1B0GTR0 161 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 SDR42E2A6NKP2 422 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 SPECC1L-ADORA2AF8WAN1 911 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 TMEM63AO94886 807 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 TTC4O95801 387 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 MMP2P08253 660 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 MYBL2P10244 700 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 SERPINA4P29622 427 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 CTHP32929 405 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 CD86P42081 329 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 SCNN1BP51168 640 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 PMS2P54278 862 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 WNT3AP56704 352 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 DSC2Q02487 901 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 CDK18Q07002 472 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 DHX9Q08211 1270 aaKnown RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 NIPAL4Q0D2K0 466 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 GRSF1Q12849 480 aaKnown RBP eCLIP10.28□□□□□ -0.76
USP39-215ENST00000481409 ENPP2Q13822 863 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 FRG1Q14331 258 aaKnown RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 TRADDQ15628 312 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 DLG2Q15700 870 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 CCDC38Q502W7 563 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 ANKRD22Q5VYY1 191 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 TMEM215Q68D42 235 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 ZNF449Q6P9G9 518 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 LINGO4Q6UY18 593 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 NLRP9Q7RTR0 991 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 HDXQ7Z353 690 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 DNAAF3Q8N9W5 541 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 FRS2Q8WU20 508 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 OXNAD1Q96HP4 312 aaPredicted RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 MRGPRX3Q96LB0 322 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 MRGPRX2Q96LB1 330 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 RANBP9Q96S59 729 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 GORASP1Q9BQQ3 440 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 MLPHQ9BV36 600 aaPredicted RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 NEUROG2Q9H2A3 272 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 PABPC3Q9H361 631 aaKnown RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 VIPAS39Q9H9C1 493 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 MRM3Q9HC36 420 aaKnown RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 HACD3Q9P035 362 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 THEGQ9P2T0 379 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 THAP10Q9P2Z0 257 aaPredicted RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 DUSP12Q9UNI6 340 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 FCF1Q9Y324 198 aaKnown RBP10.28□□□□□ -0.76
USP39-215ENST00000481409 COL4A3Q01955 1670 aa10.28□□□□□ -0.76
USP39-215ENST00000481409 TICRRQ7Z2Z1 1910 aa10.27□□□□□ -0.76
USP39-215ENST00000481409 TCRBV7S3A2A0A539 114 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 MUSKO15146 869 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 HTRA2O43464 458 aaPredicted RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 NDST3O95803 873 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 MT-CYBP00156 380 aaPredicted RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 MT-CO1P00395 513 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 ABHD2P08910 425 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 PHBP35232 272 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 MAGEA4P43358 317 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 SLC6A11P48066 632 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 GALK1P51570 392 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 SUOXP51687 545 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 EIF3BP55884 814 aaKnown RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 MAXP61244 160 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 POLR2LP62875 67 aaKnown RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 MRPS21P82921 87 aaKnown RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 PDE1BQ01064 536 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 PRKCQQ04759 706 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 BCL2L1Q07817 233 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 ILF2Q12905 390 aaKnown RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 PDIA2Q13087 525 aaKnown RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 SLC1A5Q15758 541 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 PTPRNQ16849 979 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 MYLK3Q32MK0 819 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 HNRNPA1L2Q32P51 320 aaKnown RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 TMEM196Q5HYL7 178 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 FAXCQ5TGI0 409 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 ALS2CLQ60I27 953 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 FBXO38Q6PIJ6 1188 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 ZNF534Q76KX8 674 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 DSG4Q86SJ6 1040 aa10.27□□□□□ -0.77
USP39-215ENST00000481409 CAND1Q86VP6 1230 aaKnown RBP10.27□□□□□ -0.77
USP39-215ENST00000481409 SPATA22Q8NHS9 363 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 300.7 ms