RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 CLCA2Q9UQC9 943 aa24.85■■□□□ 1.57
PTCH1-210ENST00000468211 BPTFQ12830 3046 aa24.85■■□□□ 1.57
PTCH1-210ENST00000468211 COL27A1Q8IZC6 1860 aaPredicted RBP24.84■■□□□ 1.57
PTCH1-210ENST00000468211 SPTY2D1-AS1A0A0U1RR47 76 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 TSPAN6O43657 245 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 POP4O95707 220 aaKnown RBP24.84■■□□□ 1.57
PTCH1-210ENST00000468211 CKMT1AP12532 417 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 ITIH2P19823 946 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 EPHB2P29323 1055 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 ZNF143P52747 638 aaPredicted RBP24.84■■□□□ 1.57
PTCH1-210ENST00000468211 STX1AQ16623 288 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 PPP1R15BQ5SWA1 713 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 DNAJC24Q6P3W2 148 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 DCP2Q8IU60 420 aaKnown RBP24.84■■□□□ 1.57
PTCH1-210ENST00000468211 RAB7BQ96AH8 199 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 HMCESQ96FZ2 354 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 APOLD1Q96LR9 279 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 MCEEQ96PE7 176 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 LENG8Q96PV6 779 aaPredicted RBP24.84■■□□□ 1.57
PTCH1-210ENST00000468211 NLGN3Q9NZ94 848 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 FZD10Q9ULW2 581 aa24.84■■□□□ 1.57
PTCH1-210ENST00000468211 FASNP49327 2511 aaKnown RBP24.84■■□□□ 1.57
PTCH1-210ENST00000468211 SMG1Q96Q15 3661 aaKnown RBP24.84■■□□□ 1.57
PTCH1-210ENST00000468211 K7ESM1 405 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 AREL1O15033 823 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 SCAMP1O15126 338 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 CSF2P04141 144 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 ATP1A3P13637 1013 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 ITPKBP27987 946 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 OGDHQ02218 1023 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 C1QBPQ07021 282 aaKnown RBP24.83■■□□□ 1.57
PTCH1-210ENST00000468211 SGCGQ13326 291 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 EFHC2Q5JST6 749 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 ZNF354CQ86Y25 554 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 CACTIN-AS1Q8N1I8 211 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 BBC3Q96PG8 261 aaPredicted RBP24.83■■□□□ 1.57
PTCH1-210ENST00000468211 TAS2R14Q9NYV8 317 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 SHROOM3Q8TF72 1996 aa24.83■■□□□ 1.57
PTCH1-210ENST00000468211 ANKRD36A6QL64 1941 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 NEMP1O14524 444 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 CREB3O43889 395 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 MT-CO3P00414 261 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 NME1P15531 152 aaKnown RBP24.82■■□□□ 1.56
PTCH1-210ENST00000468211 CDK11BP21127 795 aaKnown RBP24.82■■□□□ 1.56
PTCH1-210ENST00000468211 RABIFP47224 123 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 HNRNPKP61978 463 aaKnown RBP eCLIP24.82■■□□□ 1.56
PTCH1-210ENST00000468211 E2F1Q01094 437 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 PDE1CQ14123 709 aaPredicted RBP24.82■■□□□ 1.56
PTCH1-210ENST00000468211 HS1BP3Q53T59 392 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 GDPD4Q6W3E5 623 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 ZNF548Q8NEK5 533 aaPredicted RBP24.82■■□□□ 1.56
PTCH1-210ENST00000468211 ANKRD20A12PQ8NF67 263 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 ASB12Q8WXK4 309 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 TTYH3Q9C0H2 523 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 PCDHB1Q9Y5F3 818 aa24.82■■□□□ 1.56
PTCH1-210ENST00000468211 RASA4BC9J798 803 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 FPGTO14772 594 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 INSIG1O15503 277 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 RASA4O43374 803 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 ANP32AP39687 249 aaKnown RBP24.81■■□□□ 1.56
PTCH1-210ENST00000468211 EIF2S3P41091 472 aaKnown RBP24.81■■□□□ 1.56
PTCH1-210ENST00000468211 PFN3P60673 137 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 EIF2B5Q13144 721 aaKnown RBP24.81■■□□□ 1.56
PTCH1-210ENST00000468211 ACAD10Q6JQN1 1059 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 IRF2BP2Q7Z5L9 587 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 PARGQ86W56 976 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 MCOLN2Q8IZK6 566 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 CENPTQ96BT3 561 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 GDAP1L1Q96MZ0 367 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 CNPY3Q9BT09 278 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 SYT11Q9BT88 431 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 OSBPL1AQ9BXW6 950 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 LHX3Q9UBR4 397 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 PNMA8BQ9ULN7 279 aaPredicted RBP24.81■■□□□ 1.56
PTCH1-210ENST00000468211 RP1P56715 2156 aa24.81■■□□□ 1.56
PTCH1-210ENST00000468211 PTPRQQ9UMZ3 2332 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 ZSCAN5CA6NGD5 496 aaPredicted RBP24.8■■□□□ 1.56
PTCH1-210ENST00000468211 TEX33O43247 280 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 OPA1O60313 960 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 BRINP1O60477 761 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 MMP20O60882 483 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 ALPPL2P10696 532 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 TIMP2P16035 220 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 IGFALSP35858 605 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 RHOAP61586 193 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 SERINC3Q13530 473 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 CYTH1Q15438 398 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 CDCP2Q5VXM1 449 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 TTC7BQ86TV6 843 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 ZSCAN30Q86W11 494 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 FAM181AQ8N9Y4 354 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 EXOC2Q96KP1 924 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 GBP4Q96PP9 640 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 TCEAL2Q9H3H9 227 aaPredicted RBP24.8■■□□□ 1.56
PTCH1-210ENST00000468211 GPATCH2LQ9NWQ4 482 aa24.8■■□□□ 1.56
PTCH1-210ENST00000468211 IPO11Q9UI26 975 aaKnown RBP24.8■■□□□ 1.56
PTCH1-210ENST00000468211 NEMP2A6NFY4 417 aa24.79■■□□□ 1.56
PTCH1-210ENST00000468211 WASH4PA8MWX3 477 aa24.79■■□□□ 1.56
PTCH1-210ENST00000468211 YBEYP58557 167 aaPredicted RBP24.79■■□□□ 1.56
PTCH1-210ENST00000468211 INO80DQ53TQ3 878 aaPredicted RBP24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms