RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, human

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDC42BPA-211	ENST00000466538	DYTN	A2CJ06	578 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CBY3	A6NI87	242 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	EIF3CL	B5ME19	914 aa	Known RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	AP3D1	O14617	1153 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	AKAP8	O43823	692 aa	Known RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CNOT3	O75175	753 aa	Known RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	MMP3	P08254	477 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TTK	P33981	857 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	RFC1	P35251	1148 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	OLIG2	Q13516	323 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CRYM	Q14894	314 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	RNPS1	Q15287	305 aa	Known RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	PLEKHO1	Q53GL0	409 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	ENTPD8	Q5MY95	495 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TBC1D26	Q86UD7	250 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TRIM74	Q86UV6	250 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TRIM73	Q86UV7	250 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CAMK1D	Q8IU85	385 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TMEM116	Q8NCL8	245 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CMAS	Q8NFW8	434 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	SCFD2	Q8WU76	684 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	IGFBPL1	Q8WX77	278 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	RNF183	Q96D59	192 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	NUDT16L1	Q9BRJ7	211 aa	Known RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	MRI	Q9BWK5	157 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	HEMGN	Q9BXL5	484 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	ASAH2	Q9NR71	780 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	THSD1	Q9NS62	852 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	VPS28	Q9UK41	221 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	INTS6	Q9UL03	887 aa	Known RBP	4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CARD8	Q9Y2G2	431 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	RAP2C	Q9Y3L5	183 aa		4.6	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	GAGE12J	A6NER3	117 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	MYO1G	B0I1T2	1018 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	HSPB6	O14558	160 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	LDLRAD4	O15165	306 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	BCAT2	O15382	392 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	SEC14L5	O43304	696 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	PAGE4	O60829	102 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	RBMXL2	O75526	392 aa	Known RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TSPAN9	O75954	239 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	MLYCD	O95822	493 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	MT-CYB	P00156	380 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TF	P02787	698 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	MPG	P29372	298 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TM4SF1	P30408	202 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	ZNF91	Q05481	1191 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	NIPAL4	Q0D2K0	466 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	AIMP2	Q13155	320 aa	Known RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CUL4A	Q13619	759 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	SHB	Q15464	509 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TRIP6	Q15654	476 aa	Known RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	SMTNL2	Q2TAL5	461 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	KRTAP15-1	Q3LI76	137 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	C6orf10	Q5SRN2	563 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	ZKSCAN2	Q63HK3	967 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	SLC18B1	Q6NT16	456 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	ARHGAP12	Q8IWW6	846 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CADM3	Q8N126	398 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	TTC39C	Q8N584	583 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	FRMD1	Q8N878	549 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	KDM1B	Q8NB78	822 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	BICD2	Q8TD16	824 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	OTULIN	Q96BN8	352 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	ZFYVE19	Q96K21	471 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	KRTAP9-3	Q9BYQ3	159 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	PRSS22	Q9GZN4	317 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CDT1	Q9H211	546 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	PLEKHA4	Q9H4M7	779 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	FBRSL1	Q9HCM7	1045 aa	Known RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	WDR6	Q9NNW5	1121 aa	Known RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	CORO1C	Q9ULV4	474 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	FAM96B	Q9Y3D0	163 aa		4.59	□□□□□ -1.67
CDC42BPA-211	ENST00000466538	FAM237B	A0A1B0GVD1	139 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	TYW5	A2RUC4	315 aa	Known RBP	4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	DDTL	A6NHG4	134 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538		E5RJQ4	531 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	PTGES3L	E9PB15	166 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	EIF5B	O60841	1220 aa	Known RBP	4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	MTA2	O94776	668 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	SEC31A	O94979	1220 aa	Known RBP	4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	KLKB1	P03952	638 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	CTPS1	P17812	591 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	EPHB2	P29323	1055 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	CDA	P32320	146 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	TNFSF8	P32971	234 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	PSMB10	P40306	273 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	CSTF3	Q12996	717 aa	Known RBP	4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	PPP2R5B	Q15173	497 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	RILPL1	Q5EBL4	403 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	CYP20A1	Q6UW02	462 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	ZNF793	Q6ZN11	406 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	ANKRD13B	Q86YJ7	626 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	FAM217A	Q8IXS0	508 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	KIAA2013	Q8IYS2	634 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	RBFA	Q8N0V3	343 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	RASSF8	Q8NHQ8	419 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	MPLKIP	Q8TAP9	179 aa		4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	PSPC1	Q8WXF1	523 aa	Known RBP	4.58	□□□□□ -1.68
CDC42BPA-211	ENST00000466538	SGCD	Q92629	289 aa		4.58	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms