RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CELSR3Q9NYQ7 3312 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 SYCE3A1L190 88 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 EEF2KO00418 725 aaKnown RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 RNF8O76064 485 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 C1SP09871 688 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 GZMAP12544 262 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 SGCGQ13326 291 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 SERINC3Q13530 473 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 MYLK3Q32MK0 819 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 INO80DQ53TQ3 878 aaPredicted RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 TDRD12Q587J7 1177 aaKnown RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 KANSL1Q7Z3B3 1105 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 ZNF571Q7Z3V5 609 aaPredicted RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 DCP2Q8IU60 420 aaKnown RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 SLC22A18ASQ8N1D0 253 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 UMODL1-AS1Q8N2C9 162 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 DENND6BQ8NEG7 585 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 FNIP1Q8TF40 1166 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 KLHL32Q96NJ5 620 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 FUCA2Q9BTY2 467 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 SNRNP25Q9BV90 132 aaKnown RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 TTYH3Q9C0H2 523 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 DHX35Q9H5Z1 703 aaKnown RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 KLHL11Q9NVR0 708 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 AIPL1Q9NZN9 384 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 UBA2Q9UBT2 640 aaPredicted RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 CNOT8Q9UFF9 292 aaKnown RBP14.15□□□□□ -0.14
USP4-206ENST00000461553 ITM2BQ9Y287 266 aa14.15□□□□□ -0.14
USP4-206ENST00000461553 ADAMTS20P59510 1910 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 FAM149AA5PLN7 773 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 H3BM21 787 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 FPGTO14772 594 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 PRPSAP2O60256 369 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 MYBL1P10243 752 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 ALPPL2P10696 532 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 RABIFP47224 123 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 NDST2P52849 883 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 DAB2P98082 770 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 FGL2Q14314 439 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 IQCB1Q15051 598 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 KLHL40Q2TBA0 621 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 GDPD4Q6W3E5 623 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 Q6ZSR6 202 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 PARGQ86W56 976 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 TMPRSS12Q86WS5 348 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 DNAAF5Q86Y56 855 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 IFT43Q96FT9 208 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 EXOC2Q96KP1 924 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 NAP1L5Q96NT1 182 aaPredicted RBP14.14□□□□□ -0.15
USP4-206ENST00000461553 EDEM3Q9BZQ6 932 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 KLC2Q9H0B6 622 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 PCSK1NQ9UHG2 260 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 GGT7Q9UJ14 662 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 HS3ST3A1Q9Y663 406 aa14.14□□□□□ -0.15
USP4-206ENST00000461553 IGLON5A6NGN9 336 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 ARHGAP42A6NI28 874 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 DDX3XO00571 662 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP4-206ENST00000461553 RAD51BO15315 384 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 FFAR2O15552 330 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 DAPK3O43293 454 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 PIAS2O75928 621 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 PAK4O96013 591 aaPredicted RBP14.13□□□□□ -0.15
USP4-206ENST00000461553 FTLP02792 175 aaPredicted RBP14.13□□□□□ -0.15
USP4-206ENST00000461553 CKMT2P17540 419 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 XPAP23025 273 aaPredicted RBP14.13□□□□□ -0.15
USP4-206ENST00000461553 DGKAP23743 735 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 ILKQ13418 452 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 GRM3Q14832 879 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 PPP6R3Q5H9R7 873 aaPredicted RBP14.13□□□□□ -0.15
USP4-206ENST00000461553 FIGNQ5HY92 759 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 LRRC73Q5JTD7 316 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 CFAP58Q5T655 872 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 ERMARDQ5T6L9 678 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 VPS36Q86VN1 386 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 OR4C6Q8NH72 309 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 MDM1Q8TC05 714 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 CXorf40AQ8TE69 158 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 CELF6Q96J87 481 aaKnown RBP14.13□□□□□ -0.15
USP4-206ENST00000461553 PEBP4Q96S96 227 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 C1QTNF7Q9BXJ2 289 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 LRRC19Q9H756 370 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 SP110Q9HB58 689 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 MRPL47Q9HD33 250 aaKnown RBP14.13□□□□□ -0.15
USP4-206ENST00000461553 GPR27Q9NS67 375 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 DNAJC28Q9NX36 388 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 LHX3Q9UBR4 397 aa14.13□□□□□ -0.15
USP4-206ENST00000461553 URB1O60287 2271 aaKnown RBP14.13□□□□□ -0.15
USP4-206ENST00000461553 POM121BA6NF01 834 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 TMEM191CA6NGB0 347 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 GOLGA6L19H0YKK7 550 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 SPINT1O43278 529 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 SIGLEC6O43699 453 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 PIGNO95427 931 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 MIPP30301 263 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 ZNF135P52742 658 aaPredicted RBP14.12□□□□□ -0.15
USP4-206ENST00000461553 HNRNPKP61978 463 aaKnown RBP eCLIP14.12□□□□□ -0.15
USP4-206ENST00000461553 FANCCQ00597 558 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 ELP6Q0PNE2 266 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 ZNF211Q13398 564 aaPredicted RBP14.12□□□□□ -0.15
USP4-206ENST00000461553 PDE1CQ14123 709 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms