RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 A0A1W2PQH9 124 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 EME2A4GXA9 379 aaPredicted RBP11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PEX11AO75192 247 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 CABYRO75952 493 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 MYL4P12829 197 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PRKCHP24723 683 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 POU4F1Q01851 419 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 LAMB3Q13751 1172 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PKN3Q6P5Z2 889 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 LPCAT1Q8NF37 534 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 DIS3LQ8TF46 1054 aaKnown RBP11.76□□□□□ -0.53
NPHP4-204ENST00000460696 TMEM40Q8WWA1 233 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 CDH19Q9H159 772 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 CAAP1Q9H8G2 361 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 WDR41Q9HAD4 459 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 VTI1BQ9UEU0 232 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PRKAG3Q9UGI9 489 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 EVPLQ92817 2033 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 MEIS3P2A8K0S8 358 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 E2F6O75461 281 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 RFPL1O75677 317 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 WFS1O76024 890 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 TM7SF2O76062 418 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 F2P00734 622 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 IRF9Q00978 393 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 KLF10Q13118 480 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 TMEM199Q8N511 208 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PRR11Q96HE9 360 aaPredicted RBP11.76□□□□□ -0.53
NPHP4-204ENST00000460696 ZNF333Q96JL9 665 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 FAR2Q96K12 515 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 CNDP1Q96KN2 507 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 TEKT5Q96M29 485 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 THEGQ9P2T0 379 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 APPL1Q9UKG1 709 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 NCOR1O75376 2440 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 FAM72CH0Y354 149 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 RHOCP08134 193 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 ITGB6P18564 788 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 NEK3P51956 506 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PFKFB4Q16877 469 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 FAM72AQ5TYM5 149 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 FAM72DQ6L9T8 149 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 IRGCQ6NXR0 463 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 FAM72BQ86X60 149 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 CFAP52Q8N1V2 620 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 UBR7Q8N806 425 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 OR6Y1Q8NGX8 325 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 LENG8Q96PV6 779 aaPredicted RBP11.76□□□□□ -0.53
NPHP4-204ENST00000460696 ING2Q9H160 280 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 CXCL16Q9H2A7 254 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 ATP13A1Q9HD20 1204 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PDP2Q9P2J9 529 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PKP3Q9Y446 797 aa11.76□□□□□ -0.53
NPHP4-204ENST00000460696 PIRO00625 290 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 SOAT2O75908 522 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 BAIAP3O94812 1187 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 ATP5F1P24539 256 aaPredicted RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 GCAP28676 217 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 RECQLP46063 649 aaPredicted RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 ALDH1A3P47895 512 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 PGGT1BP53609 377 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 SH3BGRP55822 239 aaPredicted RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 KCNK10P57789 538 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 PLOD1Q02809 727 aaPredicted RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 INSCQ1MX18 579 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 INTS6LQ5JSJ4 861 aaKnown RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 COL13A1Q5TAT6 717 aaPredicted RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 TRNP1Q6NT89 227 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 WDR60Q8WVS4 1066 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 PPP2R3CQ969Q6 453 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 C11orf49Q9H6J7 331 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 IGSF9Q9P2J2 1179 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 TPRP12270 2363 aaKnown RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 RGSL1A5PLK6 1076 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 ATP5BP06576 529 aaKnown RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 CHRNGP07510 517 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 DLDP09622 509 aaKnown RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 PIK3R1P27986 724 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 FMO4P31512 558 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 AIF1P55008 147 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 RAD51Q06609 339 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 INPP5AQ14642 412 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 LPCAT4Q643R3 524 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 CGB2Q6NT52 195 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 POTEHQ6S545 545 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 NPY6RQ99463 290 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 SMOQ99835 787 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 ZYG11BQ9C0D3 744 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 WBP1LQ9NX94 342 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 MRASO14807 208 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 TBX10O75333 385 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 TM4SF4P48230 202 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 GLUD2P49448 558 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 CDH18Q13634 790 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 C16orf59Q7L2K0 433 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 CARNMT1Q8N4J0 409 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 SLC9A7Q96T83 725 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 POLR1EQ9GZS1 481 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms